Replikin peptides in rapid replication of glioma cells and in influenza epidemics

ABSTRACT

Peptides of influenza virus hemagglutinin protein and  Plasmodium falciparum  malaria antigen, antibodies specific for the peptides, influenza vaccines, malaria vaccines and methods of stimulating the immune response of a subject to produce antibodies to influenza virus or malaria are disclosed. Also disclosed are methods for formulating vaccines for influenza virus.

CROSS REFERENCE TO OTHER APPLICATIONS

[0001] This application is a Continuation-In-Part Application of U.S. Ser. No. 09/984,057, filed Nov. 26, 2001, which claims priority from Provisional Application No. 60/303,396, filed Jul. 9, 2001 and Provisional Application U.S. 60/278,761 filed Mar. 27, 2001, the subject matter of which is incorporated by reference hereto.

FIELD OF THE INVENTION

[0002] This invention relates to the identification and use of Replikins, a class of peptides that share structural characteristics. In particular, this invention relates to Replikins which have been identified in influenza viruses and their use in designing influenza virus vaccines.

BACKGROUND OF THE INVENTION

[0003] Influenza is an acute respiratory illness of global importance. Despite international attempts to control influenza virus outbreaks through vaccination influenza infections remain an important cause of morbidity and mortality. Worldwide influenza pandemics have occurred at irregular and previously unpredictable intervals throughout history and it is expected that they will continue to occur in the future. The impact of pandemic influenza is substantial in terms of morbidity, mortality and economic cost.

[0004] Influenza vaccines remain the most effective defense against influenza virus, but because of the ability of the virus to mutate and the availability of non-human host reservoirs it is expected that influenza will remain an emergent or re-emergent infection. Global influenza surveillance indicates that influenza viruses may vary within a country and between countries and continents during an influenza season. Virologic surveillance is of importance in monitoring antigenic shift and drift. Disease surveillance is also important in assessing the impact of epidemics. Both types of information have provided the basis of vaccine composition and the correct use of antivirals. However, to date there has been only annual post hoc hematological classification of the increasing number of emerging influenza virus strains, and no specific chemical structure of the viruses has been identified as an indicator of approaching influenza epidemic or pandemic. Currently, the only basis for annual classification of influenza virus as active, inactive or prevalent in a given year is the activities of the virus hemagglutinin and neuramimidase proteins. No influenza viral chemical structure has been identified that can be used for quantitative warning of epidemics or pandemics or to design more effective and safer vaccines.

[0005] Because of the annual administration of influenza vaccines and the short period of time when a vaccine can be administered, strategies directed at improving vaccine coverage are of critical importance.

[0006] Another disease which has proved difficult to treat and for which there is no effective vaccine is malaria. Malaria causes much physical and economic hardship in tropical regions. Malaria is caused by Plasmodium falciparum, which has proved to be extremely resistant to treatment and to date, a vaccine for malaria remains elusive. Thus, there is a need for effective malaria vaccines and methods of treating or preventing the disease.

SUMMARY OF THE INVENTION

[0007] In one aspect of the invention there are provided isolated influenza virus peptides containing a Replikin sequence. The influenza virus peptides comprise from 7 to about 50 amino acids including (1) at least one lysine residue located six to ten amino acid residues from a second lysine residue; (2) at least one histidine residue; and (3) at least 6% lysine residues.

[0008] In another aspect of the invention there is provided a process for stimulating the immune system of a subject to produce antibodies that bind specifically to an influenza virus Replikin sequence, said process comprising administering to the subject an effective amount of a dosage of a composition comprising at least one influenza virus replikin peptide. In a preferred embodiment the composition comprises at least one peptide that is present in an emerging strain of influenza virus.

[0009] The present invention also provides antibodies that bind specifically to an influenza virus Replikin, as defined herein, as well as antibody cocktails containing a plurality of antibodies that specifically bind to influenza virus Replikins. In one embodiment of the invention, there are provided compositions comprising an antibody or antibodies that specifically bind to an influenza Replica and a pharmaceutically acceptable carrier.

[0010] The present invention also provides therapeutic compositions comprising one or more of isolated influenza virus peptides having from 7 to about 50 amino acids comprising

[0011] 1) at least one lysine residue located six to ten residues from a second lysine residue; (2) at least one histidine residue; and (3) at least 6% lysine residues, and a pharmaceutically acceptable carrier.

[0012] In another aspect of the invention there is provided an antisense nucleic acid molecule complementary to an influenza virus hemagglutinin Replikin mRNA sequence, said Replikin mRNA sequence having from 7 to about 50 amino acids comprising

[0013] (1) at least one lysine residue located six to ten residues from a second lysine residue; (2) at least one histidine residue; and (3) at least 6% lysine residues.

[0014] In yet another aspect of the invention, there is provided a method of stimulating the immune system of a subject to produce antibodies to influenza virus comprising administering an effective amount of at least one influenza virus Replikin peptide having from 7 to about 50 amino acids comprising (1) at least one lysine residue located six to ten amino acid residues from a second lysine residue; (2) at least one histidine residue; and (3) at least 6% lysine residues.

[0015] In another aspect, there is provided a method of selecting an influenza virus peptide for inclusion in an influenza virus vaccine comprising

[0016] (1) obtaining at least one isolate of each strain of a plurality of strains of influenza virus,

[0017] (2) analyzing the hemagglutinin amino acid sequence of the at least one isolate of each strain of the plurality of strains of influenza virus for the presence and concentration of Replikin sequences,

[0018] (3) comparing the concentration of Replikin sequences in the hemagglutinin amino acid sequence of the at least one isolate of each strain of the plurality of strains of influenza virus to the concentration of Replikin sequences observed in the hemagglutinin amino acid sequence of each of the strains at at least one earlier time period to provide the concentration of Replikins for at least two time periods, said at least one earlier time period being within about six months to about three years prior to step (1),

[0019] (4) identifying the strain of influenza virus having the highest increase in concentration of Replikin sequences during the at least two time periods,

[0020] (5) selecting at least one Replikin sequence present in the strain of influenza virus peptide identified in step (4) as a peptide for inclusion in an influenza virus vaccine.

[0021] The present invention also provides a method of making an influenza virus vaccine comprising

[0022] (1) identifying a strain of influenza virus as an emerging strain,

[0023] (2) selecting at least one Replikin sequence present in the emerging strain as a peptide template for influenza virus vaccine manufacture,

[0024] (3) synthesizing peptides having the amino acid sequence of the at least one Replikin sequence selected in step (2), and

[0025] (4) combining a therapeutically effective amount of the peptides of step (4) with a pharmaceutically acceptable carrier and/or adjuvant.

[0026] In another aspect, the invention is directed to a method of identifying an emerging strain of influenza virus for diagnostic or therapeutic purposes comprising

[0027] (1) obtaining at least one isolate of each strain of a plurality of strains of influenza virus,

[0028] (2) analyzing the hemagglutinin amino acid sequence of the at least one isolate of each strain of the plurality of strains of influenza virus for the presence and concentration of Replikin sequences,

[0029] (3) comparing the concentration of Replikin sequences in the hemagglutinin amino acid sequence of the at least one isolate of each strain of the plurality of strains of influenza virus to the concentration of Replikin sequences observed in the hemagglutinin amino acid sequence of each of the strains at at least one earlier time period to provide the concentration of Replikins for at least two time periods, said at least one earlier time period being within about six months to about three years prior to step (1), and

[0030] (4) identifying the strain of influenza virus having the highest increase in concentration of Replikin sequences during the at least two time periods.

[0031] In yet another aspect of the invention, there is provided an influenza virus vaccine comprising at least one isolated Replikin present in the hemagglutinin protein of an emerging strain of influenza virus and a pharmaceutically acceptable carrier and/or adjuvant.

[0032] Also provided by the present invention is a method of preventing or treating influenza virus infection comprising administering to a patient in need thereof a vaccine comprising at least one isolated Replikin present in the hemagglutinin protein of an emerging strain of influenza virus and a pharmaceutically acceptable carrier and/or adjuvant.

[0033] In another aspect of the invention, there are provided vaccines and methods for preventing or treating malaria. The malaria vaccines comprise at least one isolated Plasmodium falciparum Replikin. The present invention also provides methods for treating or preventing malaria comprising administering to a patient an effective amount of a vaccine comprising at least one isolated Plasmodium falciparum Replikin.

[0034] Also provided by the present invention are antibodies, antibody cocktails and compositions that comprise antibodies that specifically bind to a Replikin or Replikins present in a malaria antigen of Plasmodium falciparum.

[0035] As used herein, the term “peptide” refers to a compound of two or more amino acids in which the carboxyl group of one is united with an amino group of another, forming a peptide bond. The term peptide is also used to denote the amino acid sequence encoding such a compound. Thus, a peptide sequence may be a subsequence of a larger polypeptide sequence. As used herein, a Replikin peptide is a peptide having 7 to about 50 amino acids comprising (1) at least one lysine residue located six to ten amino acid residues from a second lysine residue; (2) at least one histidine residue; and (3) at least 6% lysine residues. Similarly, a replikin sequence is the amino acid sequence encoding such a peptide.

[0036] The phrase “emerging strain” as used herein refers to a strain of influenza virus identified as having an increasing concentration of Replikin sequences in its hemagglutinin and/or neuramimidase protein sequence, relative to the concentration of replikins in other strains of influenza virus. The increase in concentration occurs over a period of at least about six months, and preferably over a period of at least about one year, most preferably over a period of at least about three years or more.

BRIEF DESCRIPTION OF THE DRAWINGS

[0037]FIG. 1 is a bar graph depicting the frequency of occurrence of replikins in various protein groups.

[0038]FIG. 2 is a graph depicting the percentage of malignin per milligram total membrane protein during anaerobic replication of glioblastoma cells.

[0039]FIG. 3 is a bar graph showing amount of antimalignin antibody produced in response to exposure to the recognin 16-mer.

[0040]FIG. 4A is a photograph of a blood smear taken with ordinary and fluorescent light. FIG. 4B is a photograph of a blood smear taken with ordinary and fluorescent light illustrating the presence of two leukemic cells. FIG. 4C is a photograph of a dense layer of glioma cells in the presence of antimalignin antibody. FIG. 4D and FIG. 4E are photographs of the layer of cells in FIG. 4C taken at 30 and 45 minutes following addition of antimalignin antibody.

[0041]FIG. 4F is a bar graph showing the inhibition of growth of small cell lung carcinoma cells in vitro by antimalignin antibody.

[0042]FIG. 5 is a plot of the amount of antimalignin antibody present in the serum of patients with benign or malignant breast disease pre-and post surgery.

[0043]FIG. 6 is a box diagram depicting an embodiment of the invention wherein a computer is used to carry out the 3-point-recognition method of identifying replikin sequences.

[0044]FIG. 7 is a graph showing the concentration of Replikins observed in hemagglutinin of influenza B and influenza A strain, H1N1, on a year by year basis from 1918 through 2001.

[0045]FIG. 8 is a graph of the replikin concentration observed in hemagglutinin of influenza A strains, H2N2 and H3N2, as well as an emerging strain defined by its constituent Replikins, designated H3N2(R), on a year by year basis from 1950 to 2001.

DETAILED DESCRIPTION OF THE INVENTION

[0046] The present invention provides methods for predicting future epidemics or pandemics of influenza virus, and vaccines and methods of designing effective vaccines against influenza virus. Identification of a new family of small peptides related to the phenomenon of rapid replication, referred to herein as Replikins, provides new targets for influenza virus detection and influenza vaccine development. Identification of this new family of peptides also provides for the detection of malaria and provides new targets for malaria vaccine development.

[0047] The first Replikin sequence to be identified was the cancer cell Replikin found in a brain cancer protein, malignin, which was demonstrated to be enriched ten-fold during rapid anaerobic replication of glioblastoma multiforme (glioma) cells. (FIG. 2) Malignin is a 10 KDa portion of the 250 KDa glycoprotein 10B, which was isolated in vivo and in vitro from membranes of glioblastoma multiforme (glioma) cells. Hydrolysis and mass spectroscopy of malignin revealed a 16-mer peptide sequence, ykagvaflhkkndide (SEQ ID NO.:4), which is referred to herein as the glioma Replikin and which includes the shorter peptide, kagvaflhkk (SEQ ID NO.: 1), both of which apparently are absent in the normal human genome.

[0048] Table 1 illustrates how the sequence of the glioma Replikin, the 16-mer peptide sequence, ykagvaflhkkndide (SEQ ID NO.: 4) was determined. TABLE 1 16-mer peptide sequence ykagvaflhkkndide obtained from malignin by hydrolysis and mass spectrometry Method By Which Fragment Obtained Auto- hydrolysis Auto- of malignin hydrolysis immobilized Micro- Micro- Seq of malignin on waved waved ID Fragment MH+ free in bromoacetyl 5 30 NO. Identified (mass) Sequence solution cellulose seconds seconds 19 1-3  381.21 ( )yka(g) + 20 1-5  537.30 ( )ykagv(a) + 21 2-6  445.28 (y)kagva(f) + 22 2-7  592.35 (Y)kagvaf(1) + 23 4-11 899.55 (a)gvaf1hkk(n) + 24 5-7  336.19 (g)vaf(1) + 25 6-7  237.12 (v)af(1) + 26 6-10 615.36 (v)af1hk(k) + 27 6-10 615.36 (v)af1hk(k) + 28 6-12 857.50 (v)af1hkkn(d) + 29 6-12 857.50 (v)aihkkn(d) + 30 7-8  279.17 (a)f1(h) + 31 10-16  861.43 (h)kkndide( ) + 32 11-14  489.27 (k)kndi(d) + 33 12-15  476.2− (k)ndid(e) +

[0049] When the 16-mer glioma Replikin was synthesized and injected as a synthetic vaccine into rabbits, abundant antimalignin antibody was produced. (Bogoch et al., Cancer Detection and Prevention, 26(Supp. 1): 402 (2002). The concentration of antimalignin antibody in serum in vivo has been shown to relate quantitatively to the survival of cancer patients. (Bogoch et al., Protides of Biological Fluids, 31:739-747 (1984). In vitro antimalignin antibodies have been shown to be cytotoxic to cancer cells at a concentration of picograms (femtomolar) per cancer cell. (Bogoch et al., Cancer Detection and Prevention, 26(Supp. 1): 402 (2002).

[0050] Studies carried out by the inventors showed that the glioma Replikin is not represented in the normal healthy human genome. Consequently, a search for the origin and possible homologues of the Replikin sequence was undertaken by analysis of published sequences of various organisms.

[0051] By using the 16-mer glioma Replikin sequence as a template and constructing a recognition proteomic system to visually scan the amino acid sequences of proteins of several different organisms, a new class of peptides, the Replikins, was identified. The present invention provides a method for identifying nucleotide or amino acid sequences that include a Replikin sequence. The method is referred to herein as a 3-point-recognition method. By use of the “3-point recognition” method, described herein below, a new class of peptides was revealed in algae, yeast, fungi, amoebae, bacteria, plant and virus proteins having replication, transformation, or redox functions. Surprisingly, the Replikin peptides were found to be concentrated in larger ‘replicating’ and ‘transforming’ proteins (so designated by their investigators, See Table 2). No sequences were found to be identical to the malignin 16-mer peptide.

[0052] Table 2 illustrates several Replikin sequences that were identified by the 3-point recognition method of the invention. TABLE 2 Examples Of Replikins in various Organisms - prototype: Glioma Replikin* kagvaflhkk (SEQ ID No.: 1) SEQ ID NO. Algae: 34 Caldophera prolifera kaskftkh 35 Isolepisprolifera kaqaetgeikgh Yeast: 36 Schizosaccharomyces pombe ksfkypkkhk 37 Oryza sativa kkaygnelhk 2 Sacch. cerevisiae replication binding protein hsikrelgiifdk Fungi: Isocitrate lyase ICI l, Penicillium marneffei kvdivthqk 38 DNA-dependent RNA polymerase 11, Diseula destructiva kleedaayhrkk 39 Ophiostoma novo-u1m 1, RNA in Dutch elm disease kvilplrgnikgiffkh 40 fungus Amoeba: 41 Entamoeba invadens, histone H2B klilkgdlnkh Bacteria: 42 Pribosomal protein replication factor, Helicobacter pylori ksvhaflk Replication-associated protein Staph. aureus 10 Mycoplasma pulmonic, chromosome replication kkektthnk 43 Macrophage infectivity potentiator, L. legionella kvhffqlkk 90 Bacillus anthracis kihlisvkk 91 Bacillus anthracis hvkkekeknk 92 Bacillus anthracis khivkievk 93 Bacillus anthracis kkkkikdiygkdallh 94 Bacillus anthracis kwekikqh 95 Bacillus anthracis kklqipppiepkkddiih 96 Bacillus anthracis hnryasnivesayllilnew- knniqsdlikk 97 Bacillus anthracis havddyagyllknqsdlv- tnskk 98 Bacillus anthracis haerlkvqknapk Plants: 44 Arabidopsis thaliana, prolifera kdhdfdgdk 45 Arabidopsis thaliana, cytoplasmic ribosomal kmkglkqkkah 46 Arabidopsis thaliana, DNA binding protein kelssttqeksh Viruses: 9 Replication associated protein A [Maize streak virus] kekkpskdeimrdiish 11 Bovine herpes virus 4, DNA replication protein hkinitngqk 12 Meleagrid herpesvirus 1, replication binding protein hkdlyrllmk 47 Feline immunodeficiency hlkdyklvk 3 Foot and Mouth Disease (O) hkqkivapvk 5 HIV Type 1 kcfncgkegh 7 HIV Type 2 kcwncgkegh 99 Small Pox Virus (Variola) khynnitwyk 100 Small Pox Virus (Variola) kysqtgkeliih 101 Small Pox Virus (Variola) hyddvrikndivvsrck 102 Small Pox Virus (Variola) hrfklildski 103 Small Pox Virus (Variola) kerghnyyfek Tumor 48 Rous sarcoma virus tyrosine-protein kinase kklrhek Viruses: 49 v-yes, avian sarcoma kklrhdk 50 c-yes, colon cancer, malignant melanoma kklrhdk 51 v-srcC, avian sarcoma kklrhek 52 c-src, colon, mammary, panrcreatic cancer kklrhek 53 Neuroblastoma RAS viral (v-ras) oncogene kqahelak 54 VPl (major capsid protein) [Polyamavirus sp.] kthrfskh 55 Sindbis knlhekik 56 El [Human papilloamavirus type 71] khrpllqlk 57 v-erbB from AEV and c-erb kspnhvk 58 v-fms (feline sarcoma) knihlekk 59 c-fms (acute and chronic myelomonocytic tumors) knihlekk 60 large t-antigen I [Polyomavirus sp.l kphlaqslek 61 middle t-antigen [Polyomavirus sp,l- kqhrelkdk 62 small t-antigen [Polyomavirus spJ, kqhrelkdk 63 v-abl, murine acute leukemia kvpvlisptlkh 64 Human T-cell lymphotropic virus typo 2 kslllevdkdish 65 c-kit, GI tumors, small cell lung carcinoma kagitimvkreyh 18 Hepatitis C hyppkpgcivpak Trans- 66 Transforming protein myb ksgkhlgk forming 67 Transforming protein myc, Burkitt lymphoma krreqlkhk Proteins: 68 Ras-related GTP-binding protein ksfevikvih 69 Transforming protein ras (teratocarcinoma) kkkhtvkk 70 TRAF-associated NF•kB activator TANK kaqkdhlsk 71 RFP transforming protein hlkrvkdlkk 72 Transforming protein D (S.C.) kygspkhrlik 73 Papilloma virus type 11, transforming protein klkhilgkarfik 74 Protein tryosine kinasc (EC 2.7.1.ll2slk kgdhvkhykirk 75 Transforming protein (axl(-)) keklrdvmvdrhk 76 Transforming protein (N-myc) klqarqqqllkkieh 77 Fibroblast growth factor 4 (Kaposi sarcoma) kkgnrvsptmkvth Cancer 78 Matrix metaloproteinase 7 (uterine) keiplhfrk Cell 79 Transcription factor 7-like kkkphikk Proteins: 80 Breast cancer antigen NY-BR-87 ktrhdplak 81 BRCA-1-Associated Ring Domain Protein (breast) khhpkdnlik 82 ‘Autoantigen from a breast tumor’ khkrkkfrqk 83 Glioma Replikin (this study) kagvaflhkk 84 Ovarian cancer antigen khkrkkfrqk 85 EE L leukemia kkkskkhkdk 86 Proto-oncogene tyrosine-protein kinase C-ABLE hksekpalprk 87 Adenomatosis polyposis coli kkkkpsrlkgdnek 88 Gastric cancer transforming protein ktkkgnrvsptmkvth 89 Transforming protein (K-RAS 2B), lung khkekmskdgkkkkkksk

[0053] Identification of an amino acid sequence as a Replikin or as containing a Replikin, i.e., a homologue of the glioma peptide, kagvaflhkk, requires that the three following requirements be met. The peptide sequence must have (1) at least one lysine residue located six to ten residues from another lysine residue; (2) at least one histidine residue; and (3) a composition of at least 6% lysine within an amino acid sequence of 7 to about 50 residues.

[0054] Databases were searched using the National Library of Medicine keyword “PubMed” descriptor for protein sequences containing Replikin sequences. Over 4,000 protein sequences were visually examined for homologues. Sequences of all individual proteins within each group of PubMed-classified proteins were visually scanned for peptides meeting the three above-listed requirements. An infrequent occurrence of homologues was observed in “virus peptides” as a whole (1.5%) (N=953), and in other peptides not designated as associated with malignant transformation or replication such as “brain peptides” and “neuropeptides” (together 8.5%) (N=845). However, surprisingly, homologues were significantly more frequently identified in large “replicating proteins,” which were identified as having an established function in replication in bacteria, algae, and viruses. Even more surprising was the finding that Replikin homologues occurred in 100% of “tumor viruses” (N=250), in 97% of “cancer proteins” (N=401), and in 85% of “transforming viruses” (N=248). These results suggest that there are shared properties of cancer pathogenesis regardless of cell type and suggest a role of viruses in carcinogenesis, i.e., conversion of cells from a transformed albeit dormant state to a more virulent actively replicating state.

[0055] To permit classification of subtypes of Replikins, additional or “auxiliary specifications” to the basic “3-point-recognition” requirements may be added: (a) on a structural basis, such as the common occurrence of adjacent di- and polylysines in cancer cell proteins (e.g., transforming protein P21B(K-RAS 2B), lung, Table 2, SEQ ID NO.: 89), and other adjacent di-amino acids in TOLL-like receptors, or b) on a functional basis, such as exhibiting ATPase, tyrosine kinase or redox activity as seen in Table 2.

[0056] Whether Replikin structures are conserved or are subject to extensive natural mutation was examined by scanning the protein sequences of various isolates of foot and mouth disease virus (FMDV), where mutations in proteins of these viruses have been well documented worldwide for decades. Protein sequences of FMDV isolates were visually examined for the presence of both the entire Replikin and each of the component Replikin amino acid residues observed in a particular Replikin. For example, in the protein VP1 of FMDV type 0, the Replikin (SEQ ID NO.: 3) “hkqkivapvk” was found to be conserved in 78% of the 236 isolates reported in PubMed, and each amino acid was found to be conserved in individual isolates as follows: his, 95.6%; lys, 91.8%; gln 92.3%; lys, 84.1%; ile, 90.7%; val, 91.8%; ala, 97.3%; pro, 96.2%; ala, 75.4%; and lys, 88.4%. The high rate of conservation suggests structural and functional stability of the Replikin structure. Similarly, sequence conservation was observed in different isolates of HIV for its Replikins, such as (SEQ ID NO.: 5) “kcfncgkegh” or (SEQ ID NO.: 6) “kvylawvpahk” in HIV Type 1 and (SEQ ID NO.: 7) “kcwncgkegh” in HIV Type 2 (Table 2). Other examples of conservation are seen in the constant presence of malignin in successive generations, over ten years of tissue culture of glioma cells, and by the constancy of affinity of the glioma Replikin for antimalignin antibody isolated by immunoadsorption from 8,090 human sera from the U.S., U.K., Europe and Asia (e.g., FIG. 5 and U.S. Pat. No. 6,242,578 B 1).

[0057] As seen in FIG. 2, during anaerobic respiration when the rate of cell replication is increased, malignin is enriched. That is, malignin is found to increase not simply in proportion to the increase in cell number and total membrane proteins, but is enriched as much as tenfold in concentration, starting with 3% at rest and reaching 30% of total membrane protein. This clear demonstration of a marked increase in Replikin concentration with glioma cell replication points to and is consistent with the presence of Replikins here sought by the 3-point recognition method and found in the proteins of various organisms which were found by mutation studies and other previous studies to be critical to replication. For example, Replikins were identified in such proteins as “Saccharomyces cerevisiae replication binding protein” (SEQ ID NO.: 2) (hsikrelgiifdk); the “replication associated protein A of maize streak virus” (SEQ ID NO.: 8) (kyivcareahk) and (SEQ ID NO.: 9) (kekkpskdeimrdiish); the “replication-associated protein of Staphylococcus aureus” (SEQ ID NO.: 10) (kkektthnk); the “DNA replication protein of bovine herpes virus 4” (SEQ ID NO.: 11) (hkinitngqk); and the “Mealigrid herpes virus 1 replication binding protein” (SEQ ID NO.: 12) (hkdlyrllmk). Previous studies of tomato leaf curl gemini virus show that the regulation of virus accumulation appears to involve binding of amino acids 1-160 of the “replicating protein” of that virus to leaf DNA and to other replication protein molecules during virus replication. Analysis of this sequence showed that amino acids 1-163 of this “replicating protein” contain five Replikins, namely: (SEQ ID NO.: 13) kfrinaknyfltyph, (SEQ ID NO.: 14) knletpvnklfiricrefh, (SEQ ID NO.: 15) hpniqaaksstdvk, (SEQ ID NO.: 16) ksstdvkaymdkdgdvldh, and (SEQ ID NO.: 17) kasalnilrekapkdfvlqfh.

[0058] Table 2 shows that Replikin-containing proteins also are associated frequently with redox functions, and protein synthesis or elongation, as well as with cell replication. The association with metal-based redox functions, the enrichment of the Replikin-containing glioma malignin concentration during anaerobic replication, and the cytotoxicity of antimalignin at low concentrations (picograms/cell) (FIGS. 4c-f), all suggest that the Replikins are related to central respiratory functions, which are perhaps less often subjected to the mutations characteristic of proteins of more superficial location or less central survival function.

[0059] Of particular interest, it was observed that at least one Replikin per 100 amino acids was found to be present in the hemagglutinin proteins of almost all of the individual strains of influenza viruses examined. The replikin sequences that were observed to occur in the hemagglutinin proteins of isolates of each of the four prevalent strains of influenza virus, influenza B, H1N1, H2N2, and H3N2, for each year that amino acid sequence data are available (1902-2001) are shown in Tables 3, 4, 5 and 6, below. TABLE 3 Replikin Sequences present in hemagglutinins of Influenza B viruses in each year for which amino acid sequences were available (1902-2001). Year Detected in Influenza B strain Influenza B Replikins (Peak in FIG. 7:   EB1    EB2) kshfanlk 1902,19,24,38,40,43,51,59,75,76,77,89,90,93,97,98,99,00,01 (SEQ ID NO. 104) kshfanlkgtk 1902,19,24,38,40,43,51,59,75,76,77,89,90,93,97,98,99,00,01 (SEQ ID NO. 105) kshfanlkgtktrgklcpk 1902,19,24,38,40,43,51,59,75,76,77,89,90,93,97,98,99,00,01 (SEQ ID NO. 106) hekygglnk 1902,19,24,38,40,43,51,59,75,76,77,89,90,93,97,98,99,00,01 (SEQ ID NO. 107) hekygglnksk 1902,19,24,38,40,43,51,59,75,76,77,89,90,93,97,98,99,00,01 (SEQ ID NO. 108) hekygglnkskpyytgehak 1902,19,24,38,40,43,51,59,75,76,77,89,90,93,97,98,99,00,01 (SEQ ID NO. 109) hakaigncpiwvk 1902,19,24,38,40,43,51,59,75,76,77,89,90,93,97,98,99,00,01 (SEQ ID NO. 110) hakaigncpiwvktplklangtk 1902,19,24,38,40,43,51,59,75,76,77,89,90,93,97,98,99,00,01 (SEQ ID NO. 111) hakaigncpiwvktplklangtkyrppak 1902,19,24,38,40,43,51,59,75,76,77,89,90,93,97,98,99,00,01 (SEQ ID NO. 112) hakaigncpiwvktplklangtkyrppakllk 1902,19,24,38,40,43,51,59,75,76,77,89,90,93,97,98,99,00,01 (SEQ ID NO. 113) hfanlkgtktrgk 1919,76,89,90,99, 00, 01 (SEQ ID NO. 114) hfanlkgtktrgklcpk 1919,76,90,00,01 (SEQ ID NO. 115) hsdneiqmvklygdsk 1919 (SEQ ID NO. 116) hsdneiqdkmvklygdskpqk 1919 (SEQ ID NO. 117) hsdneiqmvklygdskpqk 1919,24,97,98,00 (SEQ ID NO. 118) k(a/v)silhevk 1919,40,59,90,93 (SEQ ID NO. 119) kctgtipsakasilh 1919,00 (SEQ ID NO. 120) kctgtipsakasilhevk 1919,93 (SEQ ID NO. 121) kygglnkskpyytgeh 1919 (SEQ ID NO. 122) kvwcasgrskvikgslpligeadclh 1919,38,40,43,59,75,76,77,89,90,98,99,00 (SEQ ID NO. 123) kpyytgehak 1919,38,40,59,89,90,93,97,98,01 (SEQ ID NO. 124) kcmgtipsakasilhevk 1924,43,75,76,77,93 (SEQ ID NO. 125) hnvinaekapggpyk 1938,93,97,00 (SEQ ID NO. 126) hsdnetqmaklygdsk 1938,93,97,00 (SEQ ID NO. 127) hgvavaadlkstqeaink 1940,59,00 (SEQ ID NO. 128) hgvavaadlkstqeainkdtistqeaink 1940 (SEQ ID NO. 129) klygdskpqkftssangvtth 1943,75,76,77,93,97,00 (SEQ ID NO. 130) hsdnetqmaklygdskpqk 1943,75,76,77,93 (SEQ ID NO. 131) hfanlkgtqtrgk 1959 (SEQ ID NO. 132) kprsalkckgfh 1988 (SEQ ID NO. 133) kskpyytgehakai(g/a)ncpiwvk 2000 (SEQ ID NO. 134)

[0060] TABLE 4 H1N1 Replikin Sequences present in HINI hemagglutinins of Influenza viruses in each year for which amino acid sequences were available (1918-2000) H1N1 Replikin Year Detected in Influenza H1N1 Strain (Peak in FIG. 7: P1  E1     E1.1, 1.2, 1.3     E1.4) hp(v/i)tigecpkyv(r/k)(s/t)(t/a)k 1918,25,28,30,31,35,47,48,51,52,55,56,57,59,63,77,79,80,81,85,87,88,89,91,92,95,96,97,98,99,00 (SEQ ID NO. 135) hdsnvknly(e/g)kv(k/r)(n/s)ql(k/r)nnak 1918,28,30,31,77,79,80,88,91,95,98 (SEQ ID NO. 136) hdsnvknly(e/g)kv(k/r)(n/s)qlk 1918,28,30,31,77,79,80,88,+01 91,95,98 (SEQ ID NO. 137) hkc(nn/dd)(a/t/e)cmesv(r/k)ngtydypkyseesklnre- 1918,30,35,77,80,98 (e/k)idgvk (SEQ ID NO. 138) hkc(nn/dd)(a/t/e)cmesv(r/k)ngtydypkyseesk 1918,30,35,77,80,98 (SEQ ID NO. 139) hqn(e/g)qgsgyaadqkstqnai(d/n)gitnkvnsviekmntq- 1918,28,30,31,35,59,79,95 ftavgkefnklek (SEQ ID NO. 140) hqn(e/g)qgsgyaadqkstqnai(d/n)gitnkvnsviek 1918,28,30,31,35,59,79,95 (SEQ ID NO. 141) hqn(e/g)qgsgyaadqkstqnai(d/n)gitnk 1918,28,30,31,35,59,79,95 (SEQ ID NO. 142) kfeifpktsswpnh 1918,77 (SEQ ID NO. 143) kg(n/s/t)sypkl(n/s)ksy(v/t)nnkgkevlvlwgvh 1918,35,77,96 (SEQ ID NO. 144) ksy(v/t)nnkgkevlvlwgvh 1918,35,77,96 (SEQ ID NO. 145) hkcnnecmesvkngtydypkyseesklnrekidgvk 1928,31,95 (SEQ ID NO. 146) hkcnnecmesvkngtydypkyseesk 1928,31,95 (SEQ ID NO. 147) hkcnnecmesvkngtydypk 1928,31,95 (SEQ ID NO. 148) hkcnnecmesvk 1928,31,95 (SEQ ID NO. 149) hngkssfy(k/r)nllwlt(e/g)knglypnlsksyvnnkek 1928,95,00 (SEQ ID NO. 150) hngkssfy(k/r)nllwlt(e/g)knglypnlsksyvnnk 1928,31,95,00 (SEQ ID NO. 151) hngkssfy(k/r)nllwlt(e/g)knglypnlsk 1928,31,95,00 (SEQ ID NO. 152) hngkssfy(k/r)nllwlt(e/g)k 1928,31,95,00 (SEQ ID NO. 153) kssfyknllwlteknglypnlsksyvnnkekevlvlwgvh 1928,31,95 (SEQ ID NO. 154) knllwlteknglypnlsksyvnnkekevlvlwgvh 1928,31,95 (SEQ ID NO. 155) knglypnlsksyvnnkekevlvlwgvh 1928,31,95,96,00 (SEQ ID NO. 156) ksy(v/a)nnkekev(l/-)(v/-)lwgvh 1928,31,51,95,96,98,00 (SEQ ID NO. 157) kesswpnhtvtk 1928,31,95 (SEQ ID NO. 158) het(t/n)kgvtaacpyagassfyrnllwlvkkensypklsksyv- 1930,35 nnk (SEQ ID NO. 159) het(t/n)kgvtaacpyagassfyrnllwlvkkensypklsk 1930,35 (SEQ ID NO. 160) kfeifpktsswpnevlvlwgvh 1930 (SEQ ID NO. 161) kerswpkh 1947,51,52,55,56,79,82 (SEQ ID NO. 162) klsksyvnnkekevlvlwqvh 1947,51 (SEQ ID NO. 163) knnkekevlvlwqvh 1947 (SEQ ID NO. 164) h(k/n)(g/q)kssfy(r/k)nllwltekng(l/s)yp(n/t)ls- 194879,89,96 ksyannkek (SEQ ID NO. 165) h(k/n)(g/q)kssfy(r/k)nllwltek 194879,89,96 (SEQ ID NO. 166) hakkssfyk 1951,57,59 (SEQ ID NO. 167) hngklcrlkgk 1951,52,55,56,57,59,79, (SEQ ID NO. 168) hyklnn(q/g)kk 1956,00 (SEQ ID NO. 169) hdiyrdeainnrfqiqgvkltqgyk 1956 (SEQ ID NO. 170) kgngcfeifhk 1956 (SEQ ID NO. 171) klnrliektndkyhqiek 1956 (SEQ ID NO. 172) klnrliektndkyh 1956 (SEQ ID NO. 173) kchtdkgslsttk 1956 (SEQ ID NO. 174) kinngdyaklyiwgvh 1956 (SEQ ID NO. 175) hngklcrkgiaplqlgk 1959,82 (SEQ ID NO. 176) hetnrqvtaacpyagansffrnliwlvkkessypklsk 1963,81 (SEQ ID NO. 177) hetnrqvtaacpyagansffrnliwlvkkessypk 1963,81 (SEQ ID NO. 178) hpptstdqqslyqnadayifvgsskynrkfk 1963,81 (SEQ ID NO. 179) hpptstdqqslyqnadayifvgsskynrkfkpeia 1963,81 (SEQ ID NO. 180) hdiyrdeainnrfqiqgvkitqgyk 1977,79,91 (SEQ ID NO. 181) hqneqgsgyaadqkstqnaidgitnkvnsviekmntqftavgk 1977 (SEQ ID NO. 182) hqneqgsgyaadqkstqnaidgitnkvnsviek 1977 (SEQ ID NO. 183) hqneqgsgyaadqkstqnaingitnkvnsviekmntqftavgke- 1979,91 fnklek (SEQ ID NO. 184) hngklcrlkgiaplqlgk 1979 (SEQ ID NO. 185) hkcnnecmesvk 1979 (SEQ ID NO. 186) kfeifpkasswpnh 1981 (SEQ ID NO. 187) hdsnvknlyekvrsqlrnnak 1981 (SEQ ID NO. 188) kvnsvikkmntqfaavgkefhh 1981 (SEQ ID NO. 189) kbngklck 1981 (SEQ ID NO. 190) kkgtsypklsksythnkgkevlvlwgvh 1981 (SEQ ID NO. 191) kgtsypklsksythnkgkevlvlwgvh 1981 (SEQ ID NO. 192) klsksythnkgkevlvlwgvh 1981 (SEQ ID NO. 193) ksythnkgkevlvlwgvh 1981 (SEQ ID NO. 194) kgvtascshk 1985,87 (SEQ ID NO. 195) kgvtascshkgrssfyrnllwlteknglypnlsk 1985,87 (SEQ ID NO. 196) kgnsypklsksyvnnkekevlvlwgih 1988 (SEQ ID NO. 197) kefnhlek 1988 (SEQ ID NO. 198) hpptstdqqslyqnadayvfvgsskynkkikpeiatrpk 1988 (SEQ ID NO. 199) hpptstdqqslyqnadayvfvgsskynkkfk 1988 (SEQ ID NO. 200) hegkssfyrnllwltekegsypklknsyvnk 1991 (SEQ ID NO. 201) hegkssfyrnllwltekegsypk 1991 (SEQ ID NO. 202) hkcdnecmesvrngtydypkyseesk 1991 (SEQ ID NO. 203) kesswpnhtvtk 1991,92 (SEQ ID NO. 204) knllwlteknglypnlsksyvnnkekeilvlwgvh 1991,92,96 (SEQ ID NO. 205) hngkssfy(k/m)(n/-)llwlt(e/g)(-/k)knglypnlsk 1991,92,96,00 (SEQ ID NO. 206) hngkssfyknllwltek 1991,92,96 (SEQ ID NO. 207) htvtkgvtascshngkssfyknllwlteknglypnlsksyvnn- 1995 kekevlvlwgvh (SEQ ID NO. 208) htvt(k/g)gv(t/s)ascshngkssfy(k/m)(n/-)llwlt- 1995,00 (e/g)k(-n/k)glypnlsk (SEQ ID NO. 209) htvtkgvtascshngkssfyknllwltek 1995 (SEQ ID NO. 210) kyvrstklrmvtglrnipsiqsrglfgaiagfieggwtgmidg- 1995 wygyh (SEQ ID NO. 211) hqneqgsgyaadqkstqnaingitnkvnsiiekmntqftavgk 1995 (SEQ ID NO. 212) hqneqgsgyaadqkstqnaingitnkvnsiiek 1995 (SEQ ID NO. 213) hqneqgsgyaadqkstqnaingitnk 1995 (SEQ ID NO. 214) hsgarsfyrnllwivkkgnsypk 1996 (SEQ ID NO. 215) hsgarsfyrnllwivkkgnsypklnk 1996 (SEQ ID NO. 216) hsgarsfyrnllwivkkgnsypklnksytndk 1996 (SEQ ID NO. 217) hsgarsfyrnllwivkkgnsypklnksytndkgk 1996 (SEQ ID NO. 218) htvskgvttscshngk 1996 (SEQ ID NO. 219) katswpnhettk 1996 (SEQ ID NO. 220) kqvttscshnqk 1996 (SEQ ID NO. 221) kgnsypklnksytndkgkevlviwgvh 1996 (SEQ ID NO. 222) klnksytndkgkevlviwgvh 1996 (SEQ ID NO. 223) ksytndkgkevlviwgvh 1996 (SEQ ID NO. 224) hnqkssfyrnllwlt(e/q)knglypnlsksy(v/a)annkek 1997,98,99 (SEQ ID NO. 225) hpitigecpkyvrsak 1997 (SEQ ID NO. 226) hqneqgsgyaadqkstqnaingitnkvnsvieknrntqftavgk 1998 (SEQ ID NO. 227) hqneqgsgyaadqkstqnaingitnkvnsviek 1998 (SEQ ID NO. 228) hngkssfyrnllwlteknglypnlsksyvnnkek 1998 (SEQ ID NO. 229)

[0061] TABLE 5 Replikin Sequences present in hemagglutinins of Influenza H2N2 viruses in years 1957-2000 Year Detected in Influenza H2N2 strain Influenza H2N2 Replikins (Peak in FIG. 8: P2   E2) khfekvkilpk 1957,58,59,60,61,64,65,68,78,83,84,91 (SEQ ID NO. 230) khllssvkhfekvk 1957,58,59,60,61,83,84,91 (SEQ ID NO. 231) ha(k/q/m)(d/n)ilekthngk 1957,58,59,60,61,64,65,68,78,83,84,91,95 (SEQ ID NO. 232) ha(k/q/m)(d/n)ilekthngklc(k/r) 1957,58,59,60,61,64,65,68,78,83,84,91,95 (SEQ ID NO. 233) hnvhpltigecpkyvksek 1957,58,59,65,68 (SEQ ID NO. 234) hpltigecpkyvksek 1957,58,59,65,68,64,65,68,78,83,84,91 (SEQ ID NO. 235) khllssvkhfekvkilpk 1957,58,59,60,61,64,65,68,78 (SEQ ID NO. 236) krqssgimktegtlencetkcqtplgainttlpfhnvh 1957,59,83 (SEQ ID NO. 237) kgsnyp(v/i)ak(g/r)synntsgeqmliiwq(v/i)h 1957,58,59,61,83,91,95 (SEQ ID NO. 238) httlgqsracavsgnpsffrnmvwltekgsnypvak 1957 (SEQ ID NO. 239) khfekvk 1957,59,65 (SEQ ID NO. 240) kiskrgssgimktegtlencetkcqtplgainttlpfh 1957,59,65,91 (SEQ ID NO. 241) krgssgimktegtlencetkcqtplgainttlpfh 1957,59,65,91 (SEQ ID NO. 242) ktegtlencetkcqtplgainttlpfh 1957,59,65,91 (SEQ ID NO. 243) kiskrgssgimktegtlencetkcqtplgainttlpfh 1957,59,65,91 (SEQ ID NO. 244) ktegtlencetkcqtplgainttlpfhn(v/i)h 1957,59,65,91 (SEQ ID NO. 245) kiskrgssgimktegtlencetkcqtplgainttlpfh 1957,59,65,91 (SEQ ID NO. 246) k(e/g)snypvakgsynntsgeqmliiwgvh 1957,60,65 (SEQ ID NO. 247) hpkigecpkyvksek 1957,60,65 (SEQ ID NO. 248) kcqtplgaikttlpfh 1957,65 (SEQ ID NO. 249) hhsndqgsgyaadkestqka(f/i)dgitnkvnsviek- 1961,65,68,83,84 mntqfeavgklf(n/s)nleklenlnkk (SEQ ID NO. 250) hsndqgsgyaadkestqka(f/i)dgitnkvnsviek- 1961,65,68,83,84 mntqfeavgklf(n/s)nleklenlnkk (SEQ ID NO. 251) hsndqgsgyaadkestqka(f/i)dgitnk 1961,65,68,83,84 (SEQ ID NO. 252) hdsnvrnlydkvrmqlrdnak 1964,68,76,84,91 (SEQ ID NO. 253) hkcddecmnsvkngtydypklnrneikgvk 1964,65,68,76,83,84,91 (SEQ ID NO. 254) hkcddecmnsvkngtydypklnrneik 1964,65,68,76,83,84,91 (SEQ ID NO. 255) hkcddecmnsvkngtydypk 1964,65,68,76,83,84,91 (SEQ ID NO. 256) hkcddecmnsvk 1964,65,68,76,83,84,91 (SEQ ID NO. 257) kgsnypvakgsynntngeqiliiwgvh 1976,78 (SEQ ID NO. 258) hsndqgsgyaadkestqkavdgitnkvnsviekmntqfeavgk 1976,91 (SEQ ID NO. 259) krgssgimktegtlencetkcqtplgainttlpfh 1976,78,83,84 (SEQ ID NO. 260) hpltigecpkyvksek 1976 (SEQ ID NO. 261) hakdilekthngklck 1976 (SEQ ID NO. 262)

[0062] TABLE 6 H3N2 Replikin Sequences present in H3N2 hemagglutinins of Influenza viruses in each year for which amino acid sequences were available (1968-2000) Year Detected in Influenza H3N2 strain Influenza Replikins Influenza H3N2 Replikins (Peak in FIG. 8: P3 E3 E4) hdvyrdealnnrfqikgvelksgyk 1968,72,7596,97,98 (SEQ ID NO. 263) htidltdsemnklfertrk 1968 (SEQ ID NO. 264) kfhqiek 1968,72,75,7796,97,98 (SEQ ID NO. 265) ktnekfh(g/q)iek 1968,86,98 (SEQ ID NO. 266) klnr(v/l)iektnekfh 1968,72,75,7797,98 (SEQ ID NO. 267) hqiekefsevegriqdlekyvedtk 1968,72,98 (SEQ ID NO. 268) kicnnphk 1975 (SEQ ID NO. 269) klnrvikktnekfh 1975 (SEQ ID NO. 270) hd(I,v)yrdealnnrfqik(g/q)ve(r/k)s(q/g)yk 1975,76,77,86 (SEQ ID NO. 271) hqiekefsevegriqdlekyvedtk 1975 (SEQ ID NO. 272) kyvedtkidlwsynaellvalenqh 1975 (SEQ ID NO. 273) kyvkqnslklatgmrnvpekqtrglfgaiagfiengwegmidgwygfrh 1975 (SEQ ID NO. 274) kefsevegriqdlekyvedtkidlwsynaellvalenqh 1975,2000 (SEQ ID NO. 275) hqn(s/e)(e/q)g(t/s)g(q/y)aad(l/q)k- 1975,2000 stq(a/n)a(i/l)d(q/g)I(n/t)(g/n)k(l/v)n(r/s)vi(e/c)k (SEQ ID NO. 276) hcd(g/q)f(q,r)nekwdlf(v,/i)er(s/t)k 1975,76,77,78,80,81,82,83,84,85,86,88,89,90,91,92,93,94,95,96,97,98 (SEQ ID NO. 277) htidltdsemnkklfertrk 1977, (SEQ ID NO. 278) ksgslypvlkvtmpnndnfdklyiwgvh 1977 (SEQ ID NO. 279) klnwltksgntypvlnvtmpnndnfdklviwgvh 1982 (SEQ ID NO. 280) htidltdsemnklfektrk 1986 (SEQ ID NO. 281) klnrliektnekfhqtek 1987 (SEQ ID NO. 282) htgkssvmrsdapidfcnsecitpnqsipndkpfqnvnkitygacpk 1994 (SEQ ID NO. 283) htgkssvmrsdapidfcnsecitpnqsipndkpfqnvnk 1994 (SEQ ID NO. 284) hpstdsdqtslyvrasgrvtvstkrsqqtvipk 1994 (SEQ ID NO. 285) kyvedtkidlwsynaellvalenqh 1997,98 (SEQ ID NO. 286) klfertrkqlrenaedmgngcfkiyh 1998 (SEQ ID NO. 287) krrsiksffsrlnwlh 1998 (SEQ ID NO. 288) hpvtigecpky(v/r)kstk 2000 (SEQ ID NO. 289) kgnsypklsklsksyiinkkkevlviwgih 2000 (SEQ ID NO. 290) klsklsks(v/y)iinkkkevlviwgih 2000 (SEQ ID NO. 291) klsks(v/y)iinkkkevlviwgih 2000 (SEQ ID NO. 292)

[0063] Both the concentration and type, i.e., composition of Replikins observed were found to relate to the occurrence of influenza pandemics and epidemics. The concentration of Replikins in influenza viruses was examined by visually scanning the hemagglutinin amino acid sequences published in the National Library of Medicine “PubMed” data base for influenza strains isolated world wide from human and animal reservoirs year by year over the past century, i.e., 1900 to 2001. These Replikin concentrations (number of Replikins per 100 amino acids, mean+/−SD) were then plotted for each strain.

[0064] The concentration of Replikins was found to directly relate to the occurrence of influenza pandemics and epidemics. The concentration of Replikins found in influenza B hemagglutinin and influnza A strain, H1N1, is shown in FIG. 7, and the concentration of Replikins found in the two other common influenza virus A strains, H2N2 and H3N2 is shown in FIG. 8 (H2N2, H3N2). The data in FIG. 8 also demonstrate an emerging new strain of influenza virus as defined by its constituent Replikins (H3N2(R)).

[0065] Each influenza A strain has been responsible for one pandemic: in 1918, 1957, and 1968, respectively. The data in FIGS. 7 and 8 show that at least one replikin per 100 amino acids is present in each of the influenza hemagglutinin proteins of all isolates of the four common influenza viruses examined, suggesting a function for Replikins in the maintenance of survival levels of replication. In the 1990s, during the decline of the H3N2 strain there were no Replikins present in many isolates of H3N2, but a high concentration of new replikins appeared in H3N2 isolates, which define the emergence of the H3N2(R) strain.

[0066] Several properties of Replikin concentration are seen in FIG. 7 and FIG. 8 to be common to all four influenza virus strains: (1) Concentration is cyclic over the years, with a single cycle of rise and fall occurring over a period of two to thirty years. This rise and fall is consistent with the known waxing and waning of individual influenza virus strain predominance by hemagglutinin and neuramimidase classification. (2) Peak Replikin concentrations of each influenza virus strain previously shown to be responsible for a pandemic were observed to relate specifically and individually to each of the three years of the pandemics. For example, for the pandemic of 1918, where the influenza virus strain, H1N1, was shown to be responsible, a peak concentration of the Replikins in H1N1 independently occurred (P1); for the pandemic of 1957, where H2N2 emerged and was shown to be responsible, a peak concentration of the Replikins in H2N2 occurred (P2); and for the pandemic of 1968, where H3N2 emerged and was shown to be the cause of the pandemic, a peak concentration of the Replikins in H3N2 occurred (P3). (3) In the years immediately following each of the above three pandemics, the specific Replikin concentration decreased markedly, perhaps reflecting the broadly distributed immunity generated in each case. Thus, this post-pandemic decline is specific for H1N1 immediately following the pandemic (P1) for which it was responsible, and is not a general property of all strains at the time. An increase of Replikin concentration in influenza B repeatedly occurred simultaneously with the decrease in Replikin concentration in H1N1, e.g., EB1 in 1951 and EB2 in 1976, both associated with influenza B epidemics having the highest mortality. (Stuart-Harris, et al., Edward Arnold Ltd. (1985). (4) A secondary peak concentration, which exceeded the primary peak increase in concentration, occurred 15 years after each of the three pandemics, and this secondary peak was accompanied by an epidemic: 15 years after the 1918 pandemic in an H1N1 ‘epidemic’ year (E1); eight years after the 1957 pandemic in an H2N2 ‘epidemic’ year (E2); and occurred seven years after the 1968 pandemic in an H3N2 ‘epidemic’ year (E3). These secondary peak concentrations of specific Replikins may reflect recovery of the strain. (5) Peaks of each strain's specific Replikin concentration frequently appear to be associated with declines in Replikin concentration of one or both other strains, suggesting competition between strains for host sites. (6) There is an apparent overall tendency for the Replikin concentration of each strain to decline over a period of 35 years (H2N2) to 60 years (influenza B). This decline cannot be ascribed to the influence of vaccines because it was evident in the case of influenza B from 1901 to 1964, prior to common use of influenza vaccines. In the case of influenza B, Replikin recovery from the decline is seen to occur after 1965, but Replikin concentration declined again between 1997 and 2000 (FIG. 7), and this correlates with the low occurrence of influenza B in recent case isolates. H1N1 Replikin concentration peaked in 1978-1979 (FIG. 7) together with the reappearance and prevalence of the H1N1 strain, and then peaked in 1996 coincident with an H1N1 epidemic. (FIG. 7). H1N1 Replikin concentration also declined between 1997 and 2000, and the presence of H1N1 strains decreased in isolates obtained during these years. For H2N2 Replikins, recovery from a 35 year decline has not occurred (FIG. 8), and this correlates with the absence of H2!N2 from recent isolates. For H3N2, the Replikin concentration of many isolates fell to zero during the period from 1996 to 2000, but other H3N2 isolates showed a significant, sharp increase in Replikin concentration. This indicates the emergence of a sub-strain of H3N2, which is designated herein as H3N2(R).

[0067]FIGS. 7 and 8 demonstrate that frequently a one to three year stepwise increase is observed before Replikin concentration reaches a peak. This stepwise increase proceeds the occurrence of an epidemic, which occurs concurrently with the Replikin peak. Thus, the stepwise increase in concentration of a particular strain is a signal that that particular strain is the most likely candidate to cause an epidemic or pandemic.

[0068] Currently, Replikin concentration in the H3N2(R) strain of influenza virus is increasing (FIG. 8, 1997 to 2000). Three similar previous peak increases in H3N2 Replikin concentration are seen to have occurred in the H3N2-based pandemic of 1968 (FIG. 8), when the strain first emerged, and in the H3N2-based epidemics of 1972 and 1975 (FIG. 8). Each of these pandemic and epidemics was associated with excess mortality. (Ailing, et al., Am J. Epidemiol., 113(1):30-43 (1981). The rapid ascent in concentration of the H3N2(R) subspecies of the H3N2 Replikins in 1997-2000, therefore, statistically represents an early warning of an approaching severe epidemic or pandemic. An H3N2 epidemic occurred in Russia in 2000 (FIG. 8, E4); and the CDC report of December 2001 states that currently, H3N2 is the most frequently isolated strain of influenza virus world wide. (Morbidity and Mortality Weekly Reports (MMWR), Center for Disease Control; 50(48):1084-68 (Dec. 7, 2001).

[0069] In each case of influenza virus pandemic or epidemic new Replikins emerge. There has been no observation of two of the same Replikins in a given hemagglutinin in a given isolate. To what degree the emergence of a new Replikin represents mutations versus transfer from another animal or avian pool is unknown. In some cases, each year one or more of the original Replikin structures is conserved, while at the same time, new Replikins emerge. For example, in influenza virus B hemagglutinin, five Replikins were constantly conserved between 1919 and 2001, whereas 26 Replikins came and went during the same period (some recurred after several years absence). The disappearance and re-emergence years later of a particular Replikin structure suggests that the Replikins return from another virus host pool rather than through de novo mutation.

[0070] In the case of H1N1 Replikins, the two Replikins present in the P1 peak associated with the 1918 pandemic were not present in the recovery E1 peak of 1933, which contains 12 new Replikins. Constantly conserved Replikins, therefore, are the best choice for vaccines, either alone or in combination. However, even recently appearing Replikins accompanying one year's increase in concentration frequently persist and increase further for an additional one or more years, culminating in a concentration peak and an epidemic, thus providing both an early warning and time to vaccinate with synthetic Replikins (see for example, H1N1 in the early 1990's, FIG. 7).

[0071] The data in FIGS. 7 and 8 demonstrate a direct relationship between the presence and concentration of a particular Replikin in influenza protein sequences and the occurrence of pandemics and epidemics of influenza. Thus, analysis of the influenza virus hemagglutinin protein sequence for the presence and concentration of Replikins provides a predictor of influenza pandemics and/or epidemics, as well as a target for influenza vaccine formulation.

[0072] Composition of Replikins in Strains of Influenza Virus B: Of a total of 26 Replikins identified in this strain (Table 3), the following ten Replikins are present in every influenza B isolate examined from 1902-2001. Overlapping Replikin sequences are listed separately. Lysines and histidines are in bold type to demonstrate homology consistent with the “3-point recognition.”

[0073] kshfanlk (SEQ ID NO. 104)

[0074] kshfanlkgtk (SEQ ID NO. 105)

[0075] kshfanlkgtktrgklcpk (SEQ ID NO. 106)

[0076] hekygglnk (SEQ ID NO. 107)

[0077] hekygglnksk (SEQ ID NO. 108)

[0078] hekygglnkskpyytgehak (SEQ ID NO. 10)

[0079] hakaigncpiwvk (SEQ ID NO. 110)

[0080] hakaigncpiwvvkktplklangtk (SEQ ID NO. 111)

[0081] hakaigncpiwvktplklangtkyrppak (SEQ ID NO. 112)

[0082] hakaigncpiwvktplklangtkyrppakllk (SEQ ID NO. 113)

[0083] Tables 3 and 4 indicate that there appears to be much greater stability of the Replikin structures in influenza B hemagglutinins compared with H1N1 Replikins. Influenza B has not been responsible for any pandemic, and it appears not to have an animal or avian reservoirs. (Stuart-Harris et al., Edward Arnold Ltd., London (1985)).

[0084] Influenza H1N1 Replikins: Only one replikin “hp(v/i)tigecpkyv(r/k)(s/t)(t/a)k” is present in every H1N1 isolate for which sequences are available from 1918, when the strain first appeared and caused the pandemic of that year, through 2000. (Table 4). (“(v/i)” indicates that the amino acid v or i is present in the same position in different years.) Although H1N1 contains only one persistent replikin, H1N1 appears to be more prolific than influenza B. There are 95 different replikin structures in 82 years on H1N1 versus only 31 different Replikins in 100 years of influenza B isolates (Table 4). An increase in the number of new Replikin structures occurs in years of epidemics (Tables 3, 4, 5 and 6) and correlates with increased total Replikin concentration (FIGS. 7 and 8).

[0085] Influenza H2N2 Replikins: Influenza H2N2 was responsible for the human pandemic of 1957. Three of the 20 Replikins identified in that strain for 1957 were conserved in each of the H2N2 isolates available for examination on PubMed until 1995 (Table 5).

[0086] ha(k/q/m)(d/n)ilelkthngk (SEQ ID NO. 232)

[0087] ha(k/q/m)(d/n)ilelkthngklc(k/r) (SEQ ID NO. 233)

[0088] kgsnyp(v/i)ak(g/r)synntsgeqmliiwq(v/i)h (SEQ ID No. 238)

[0089] However, in contrast to H1N1, only 13 additional Replikins have been found in H2N2 beginning in 1961. This paucity of appearance of new Replikins correlates with the decline in the concentration of the H2N2 Replikins and the appearance of H2N2 in isolates over the years. (FIG. 8).

[0090] Influenza H3N2 Replikins: Influenza H3N2 was responsible for the human pandemic of 1968. Five Replikins which appeared in 1968 disappeared after 1977, but reappeared in the 1990s (Table 6). The only Replikin structure which persisted for 22 years was hcd(g/q)f(q/r)nekwdlf(v/i)er(s/t)k, which appeared first in 1977 and persisted through 1998. The emergence of twelve new H3N2 replikins in the mid 1990s (Table 6) correlates with the increase in Replikin concentration at the same time (FIG. 8), and with the prevalence of the H3N2 strain in recent isolates. together with the concurrent disappearance of all Replikins from some of these isolates (FIG. 8), this suggests the emergence of the new substrain H3N2(R).

[0091]FIGS. 1 and 2 show that influenza epidemics and pandemics correlate with the increased concentration of replikins in influenza virus, which is due to the reappearance of at least one replikin from one to 59 years after its disappearance. Also, in the A strain only, there is an emergence of new strain-specific Replikin compositions (Tables 4-6). Increase in Replikin concentration by repetition of individual replikins within a single protein appears not to occur in influenza virus, but is seen in other organisms.

[0092] It has been believed that changes in the activity of different influenza strains are related to sequence changes in influenza hemagglutinins, which in turn are the products of substitutions effected by one of two poorly understood processes: i) antigenic drift, thought to be due to the accumulation of a series of point mutations in the hemagglutinin molecule, or ii) antigenic shift, in which the changes are so great that genetic reassortment is postulated to occur between the viruses of human and non-human hosts. First, the present data suggests that the change in activity of different influenza strains, rather than being related to non-specific sequence changes, are based upon, or relate to the increased concentration of strain-specific replikins and strain-specific increases in the replication associated with epidemics. In addition, the data were examined for a possible insight into which sequence changes are due to “drift” or “shift”, and which due to conservation, storage in reservoirs, then reappearance. The data show that the epidemic-related increase in replikin concentration is not due to the duplication of existing replikins per hemagglutinin, but is due to the reappearance of at least one replikin composition from 1 to up to 59 years after its disappearance, plus in the A strains only, the emergence of new strain-specific replikin compositions (Tables 3-6). Thus the increase in replikin concentration in the influenza B epidemics of 1951 and 1977 are not associated with the emergence of new replikin compositions in the year of the epidemic but only with the reappearance of replikin compositions which had appeared in previous years then disappeared (Table 3). In contrast, for the A strains, in addition to the reappearance of previously disappeared virus replikins, new compositions appear (e.g. in H1N1 in the year of the epidemic of 1996, in addition to the reappearance of 6 earlier replikins, 10 new compositions emerged). Since the A strains only, not influenza B, have access to non-human animal and avian reservoirs, totally new compositions probably derive from non-human host reservoirs rather than from mutations of existing human replikins which appear to bear no resemblance to the new compositions other than the basic requirements of “3-point recognition” (Tables 2-5). The more prolific nature of H1N1 compared with B, and the fact that pandemics have been produced by the three A strains only, but not by the B strain, both may also be a function of the ability of the human A strains to receive new replikin compositions from non-human viral reservoirs.

[0093] Some replikins have appeared in only one year, disappeared, and not reappeared to date (Tables 3-6). Other replikins disappear for from one to up to 81 years, when the identical replikin sequence reappears. Key replikin ‘k’ and ‘h’ amino acids, and the spaces between them, are conserved during the constant presence of particular replikins over many years, as shown in Tables 23-6 for the following strain-specific replikins: ten of influenza B, the single replikin of H1N1, and the single replikin of H2N3, as well as for the reappearance of identical replikins after an absence. Despite the marked replacement or substitution activity of other amino acids both inside the replikin structure and outside it in the rest of the hemagglutinin sequences, influenza replikin histidine (h) appears never to be, and lysine (k) is rarely replaced. Examples of this conservation are seen in the H1N1 replikin “hp(v/i)tigecpkyv(r/k)(s/t)(t/a)k,” (SEQ ID NO. 135) constant between 1918 and 2000, in the H3N2 replikin “hcd(g/q)f(q,r)nekwdlf(v/i)er(s/t)k” (SEQ ID NO. 277) constant between 1975 and 1998 and in the H3N2 replikin “hqn(s/e)(e/q)g(t/s)g(q/y)aad(l/q)kstq(a/n)a(i/l)d(q/g)I(n/t)(g/n)k,(l/v)n(r/s)vi(e/c)k” (SEQ ID NO. 276) which first appeared in 1975, disappeared for 25 years, and then reappeared in 2000. While many amino acids were substituted, the basic replikin structure of 2 lysines, 6 to 10 residues apart, one histidine, a minimum of 6% lysine in not more than approximately 50 amino acids, was conserved.

[0094] Totally random substitution would not permit the persistence of these H1N1 and H3N2 replikins, nor from 1902 to 2001 in influenza B the persistence of 10 replikin structures, nor the reappearance in 1993 of a 1919 18mer replikin after an absence of 74 years. Rather than a random type of substitution, the constancy suggests an orderly controlled process, or in the least, protection of the key replikin residues so that they are fixed or bound in some way: lysines, perhaps bound to nucleic acids, and histidines, perhaps bound to respiratory redox enzymes. The mechanisms which control this conservation are at present unknown.

[0095] Whether the conservation of replikin structures is unique to influenza or occurs in other virus replikins was examined in foot and mouth disease virus (FMDV) isolates, where extensive mutations in proteins of this virus have been well-documented worldwide over decades. In the protein VP1 of FMDV type 0, the replikin “hkqkivapvk” (SEQ ID NO. 3) was found to be conserved in 78% of the 236 isolates reported in PubMed, and each amino acid was found to be conserved in individual isolates as follows: h,95.6%; k,91.8%; q,92.3%; k,84.1%; 1,90.7%; v,91.8%; a.97.3%; p,96.2%; a,75.4%; k,88.4%. Similarly, conservation was observed in different isolates of HIV for its replikins such as “kcfncgkegh” (SEQ ID NO. 5) or “kvylavvvpahk” (SEQ ID NO. 6) in HIV Type 1 and “kcwncgkegh” (SEQ ID NO. 7) in HIV Type 216. The high rate of conservation observed in FMVD and HIV replikins suggests that conservation observed in influenza replikins is a general property of viral replikins.

[0096] Data on anti-Replikin antibodies also support Replikin class unity. An anti-Replikin antibody response has been quantified by immunoadsorption of serum antimalignin antibody to immobilized malignin (see Methods in U.S. Pat. No. 5,866,690). The, abundant production of antimalignin antibody by administration to rabbits of the synthetic version of the 16-mer peptide whose sequence was derived from malignin, absent carbohydrate or other groups, has established rigorously that this peptide alone is an epitope, that is, it is a sufficient basis for this immune response (FIG. 3). The 16-mer peptide produced both IgM and IgG forms of the antibody. Antimalignin antibody was found to be increased in concentration in serum in 37% of 79 cases in the U.S. and Asia of hepatitis B and C, early, in the first five years of infection, long before the usual observance of liver cancer, which develops about fifteen to twenty-five years after infection. Relevant to both infectious hepatitis and HIV infections, transformed cells may be one form of safe haven for the virus: prolonging cell life and avoiding virus eviction, so that the virus remains inaccessible to anti-viral treatment.

[0097] Because administration of Replikins stimulates the immune system to produce antibodies having a cytotoxic effect, peptide vaccines based on the particular influenza virus Replikin or group of Replikins observed to be most concentrated over a given time period provide protection against the particular strain of influenza most likely to cause an outbreak in a given influenza season., e.g., an emerging strain or re-emerging strain For example, analysis of the influenza virus hemagglutinin amino acid sequence on a yearly or bi-yearly basis, provides data which are useful in formulating a specifically targeted influenza vaccine for that year. It is understood that such analysis may be conducted on a region-by-region basis or at any desired time period, so that strains emerging in different areas throughout the world can be detected and specifically targeted vaccines for each region can be formulated.

[0098] Currently, vaccine formulations are changed twice yearly at international WHO and CDC meetings. Vaccine formulations are based on serological evidence of the most current preponderance of influenza virus strain in a given region of the world. However, prior to the present invention there has been no correlation of influenza virus strain specific amino acid sequence changes with occurrence of influenza epidemics or pandemics.

[0099] The observations of specific Replikins and their concentration in influenza virus proteins provides the first specific quantitative early chemical correlates of influenza pandemics and epidemics and provides for production and timely administration of influenza vaccines tailored specifically to treat the prevalent emerging or re-emerging strain of influenza virus in a particular region of the world. By analyzing the protein sequences of isolates of strains of influenza virus, such as the hemagglutinin protein sequence, for the presence, concentration and/or conservation of Replikins, influenza virus pandemics and epidemics can be predicted. Furthermore, the severity of such outbreaks of influenza can be significantly lessened by administering an influenza peptide vaccine based on the Replikin sequences found to be most abundant or shown to be on the rise in virus isolates over a given time period, such as about one to about three years.

[0100] An influenza peptide vaccine of the invention may include a single Replikin peptide sequence or may include a plurality of Replikin sequences observed in influenza virus strains. Preferably, the peptide vaccine is based on Replikin sequence(s) shown to be increasing in concentration over a given time period and conserved for at least that period of time. However, a vaccine may include a conserved Replikin peptide(s) in combination with a new Replikin(s) peptide or may be based on new Replikin peptide sequences. The Replikin peptides can be synthesized by any method, including chemical synthesis or recombinant gene technology, and may include non-Replikin sequences, although vaccines based on peptides containing only Replikin sequences are preferred. Preferably, vaccine compositions of the invention also contain a pharmaceutically acceptable carrier and/or adjuvant.

[0101] The influenza vaccines of the present invention can be administered alone or in combination with antiviral drugs, such as ganciclovir; interferon; interleukin; M2 inhibitors, such as, amantadine, rimantadine; neuramimidase inhibitors, such as zanamivir and oseltamivir; and the like, as well as with combinations of antiviral drugs.

[0102] Analysis of the primary structure of a Plasmodium farciparum malaria antigen located at the merozoite surface and/or within the parasitophorous vacuole revealed that this organism, like influenza virus, also contains numerous Replikins. However, there are several differences between the observation of Replikins in Plasmodium falciparum and influenza virus isolates. For example, Plasmodium falciparum contains several partial Replikins, referred to herein as “Replikin decoys.” These decoy structures contain an abundance of lysine residues, but lack the histidine required of Replikin structures. It is believed that the decoy structure maximizes the chances that an anti-malarial antibody or other agent will bind to the relatively less important structure containing the lysines, i.e., the Replikin decoys, rather than binding to histidine, which is present in Replikin structure, such as replikins in respiratory enzymes, which could result in destruction of the trypanosome.

[0103] Another difference seen in Plasmodium falciparum is a frequent repetition of individual Replikin structures within a single protein, which was not observed with influenza virus. Repitition may occur by (a) sharing of lysine residues between Replikins, and (b) by repetition of a portion of a Replikin sequence within another Replikin sequence.

[0104] A third significant difference between Replikin structures observed in influenza virus isolates and Plasmodium falciparum is a marked overlapping of Replikin structures throughout malarial proteins, e.g., there are nine overlapping replikins in the 39 amino acid sequence of SEQ ID NO. 393 (Replikin concentration=23.1/100 amino acids); and 15 overlapping replikins in the 41 amino acids of SEQ ID NO. 467 (Replikin concentration=36.6/100 amino acids). Both of these overlapping Replikin structures occur in blood stage trophozoites and schizonts. In contrast, influenza virus Replikins are more scattered throughout the protein and the maximum Replikin concentration is about {fraction (7.5/100)} amino acids (FIG. 7); and tomato leaf curl gemini virus, which was also observed to have overlapping replikins has only about {fraction (3.1/100)} amino acids.

[0105] This mechanism of lysine multiples is also seen in the Replikins of cancer proteins such as in gastric cancer transforming protein, ktkkgnrvsptmkvth (SEQ ID NO. 88), and in transforming protein P21B (K-RAS 2B) of lung, khkekmskdgkkkkkks (SEQ ID NO. 89). The relationship of higher Replikin concentration to rapid replication is also confirmed by analysis of HIV isolates. It was found that the slow-growing low titer strain of HIV (NSI, “Bru”, which is prevalent in early stage HIV infection has a Replikin concentration of 1.1 (+/−1.6) Replikins per 100 amino acids, whereas the rapidly-growing high titer strain of HIV (S1, “Lai”), which is prevalent in late stage HIV infection has a Replikin concentration of 6.8 (+/−2.7) Replikins per 100 amino acid residues.

[0106] The high concentration of overlapping Replikins in malaria, influenza virus and cancer cells is consistent with the legendary high and rapid replicating ability of malaria organisms. The multitude of overlapping Replikins in malaria also provides an opportunity for the organism to flood and confuse the immune system of its host and thereby maximize the chance that the wrong antibody will be made and perpetuated, leaving key malaria antigens unharmed.

[0107] As in the case of influenza virus, for example, peptide vaccines based on the Replikin structure(s) found in the malaria organism can provide an effective means of preventing and/or treating malaria. Vaccination against malaria can be achieved by administering a composition containing one or a mixture of Replikin structures observed in Plasmodium falciparum. Furthermore, antibodies to malaria Replikins can be generated and administered for passive immunity or malaria detection purposes.

[0108] Table 7 provides a list of several Plasmodium falciparum Replikin sequences. It should be noted that this list is not meant to be complete. Different isolates of the organism may contain other Replikin structures. TABLE 7 Malaria replikims a) Primary structure of a Plasmodium falciparum malaria antigen located at the merozoite surface and within the parasitophorous vacuole a) i) DECOYS: (C-Terminal) keeeekekekekekeekekeekekeekekekeekekekeekeeekk (SEQ ID NO. 293), or keeeekekekekekeskekeekekeekekekeekekekeekeeekkek (SEQ ID NO. 294), or keeeekekekekekeekekeekekekeekekeekekeekeekeeekk (SEQ ID NO. 295), or keeeekekek (SEQ ID NO. 296) ii) REPLIKINS: Hkklikalkkniesiqnkk (SEQ ID NO. 297) hkklikalkkniesiqnkm (SEQ ID NO. 298) hkklikalkk (SEQ ID NO. 299) hkklikalk (SEQ ID NO. 300) katysfvntkkkiislksqghkk (SEQ ID NO. 301) katysfvntkkkiislksqghk (SEQ ID NO. 302) katysfvntkkkiislksqgh (SEQ ID NO. 303) htyvkgkkapsdpqca dikeeckellkek (SEQ ID NO. 304) kiislksqghk (SEQ ID NO. 305) kkkkfeplkngnvsetiklih (SEQ ID NO. 306) kkkfeplkngnvsetitklih (SEQ ID NO. 307) kkfeplkngnvsetiklih (SEQ ID NO. 308) kngnvsetiklih (SEQ ID NO. 309) klihlgnkdkk (SEQ ID NO. 310) kvkkigvtlkkfeplkmgnvsetiklihlgnkdkkh (SEQ ID NO. 311) hliyknksynplllscvkkmnmlkenvdyiqnqnlfkelmnqkatysfvntkkkiislk (SEQ ID NO. 312) hliyknksynplllscvkkmnmlkenvdyiqnqnlfkelmnqkatysfvntk (SEQ ID NO. 313) hliyknksynplllscvkkmnmlkenvdyiqnqnlfkelmnqk (SEQ ID NO. 314) hliyknksynplllscvkkmnmlkenvdyiqknqnlfk (SEQ ID NO. 315) hliyknksynplllscvkkmnmlk (SEQ ID NO. 316) ksannsanngkknnaeemknlvnflqshkklikalkkniesiqnkkh (SEQ ID NO. 317) kknnaeemknlvnflqshkklikalkkniesiqnkkh (SEQ ID NO. 318) knlvnflqshkklikalkkniesiqnkkh (SEQ ID NO. 319) kklikalkkniesiqnkkh (SEQ ID NO. 320) klikalkkniesiqnkkli (SEQ ID NO. 321) kkniesiqnkkh (SEQ ID NO. 322) kniesiqnkkh (SEQ ID NO. 323) knnaeemknlvnflqsh (SEQ ID NO. 324) kklikalkkniesiqnkkqghkk (SEQ ID NO. 325) kknnaeemknlvnflqshk (SEQ ID NO. 326) knnaeemknlvnflqsh (SEQ ID NO. 327) klikalkkniesiqnkkqghkk (SEQ ID NO. 328) kvkkigvtlkkfeplkiagnvsetiklih (SEQ ID NO. 329) kngnvsetiklih (SEQ ID NO. 330) klihlgnkdkk (SEQ ID NO. 331) ksannsanngkknnaeemknlvnflqsh (SEQ ID NO. 332) kknnaeeniknlvnflqsh (SEQ ID NO. 333) kklikalkkniesiqnkkh (SEQ ID NO. 334) kalkkniesiqnkkh (SEQ ID NO. 335) kkniesiqnkkh (SEQ ID NO. 336) kehnnqkatysfvntkkkiislksqgh (SEQ ID NO. 337) ksqghkk (SEQ ID NO. 338) kkkiislksqgh (SEQ ID NO. 339) kkiislksqgh (SEQ ID NO. 340) kkniesiqnkkh (SEQ ID NO. 341) kniesiqnkkh (SEQ ID NO. 342) htyvkgkkapsdpqcadikeeckellkek (SEQ ID NO. 343) htyvkgkkapsdpqcadikeeckellk (SEQ ID NO. 344 ) b)“liver stage antigen-3” gene = “LSA-3” Replikins henvlsaalentqseeekkevidvieevk (SEQ ID NO. 345) kenvvttilekveettaesvttfsnileeiqentitndtieekleelh (SEQ ID NO. 346) hylqqmkekfskek (SEQ ID NO. 347) hylqqmkekfskeknnnvievtnkaekkgnvqvtnktekttk (SEQ ID NO. 348) hylqqmkekfskeknnnvievtnkaekkgnvqvtnktekttkvdkrtnk (SEQ ID NO. 349) hylqqmkekfskeknnnvievtnkaekkgnvqvtnktekttkvdknnkvpkkrrtqk (SEQ ID NO. 350) hylqqmkekfskeknnnvievtnkaekkgnvqvtnktekttkvdknnkvpkkrrtqksk (SEQ ID NO. 351) hvdevmkyvqkidkevdkevskaleskndvtnvlkqnqdffskvknfvkkyk (SEQ ID NO. 352) hvdevmkyvqkidkevdkevskaleskndvtnvlkqnqdffskvknfvkk (SEQ ID NO. 353) hvdevmkyvqkidkevdkevskaleskndvtnvlkqnqdffsk (SEQ ID NO. 354) hvdevmkyvqkidkevdkevskaleskndvtnvlk (SEQ ID NO. 355) hvdevmkyvqkidkevdkevskalesk (SEQ ID NO. 356) hvdevmkyvqkidkevdkevsk (SEQ ID NO. 357) hvdevmkyvqkidkevdk (SEQ ID NO. 358) hvdevmkyvqkidk (SEQ ID NO. 359) kdevidlivqkekriekvkakkkklekkveegvsglkkh (SEQ ID NO. 360) kvkakkkklekkveegvsglkkh (SEQ ID NO. 361) kakkkklekkveegvsglkkh (SEQ ID NO. 362) kkkklekkveegvsglkkh (SEQ ID NO. 363) kkklekkveegvsglkkh (SEQ ID NO. 364) kklekkveegvsglkkh (SEQ ID NO. 365) klekkveegvsglkkh (SEQ ID NO. 366) kkveegvsglkkh (SEQ ID NO. 367) kveegvsglkkh (SEQ ID NO.368) hveqnvyvdvdvpamkdqflgilneagglkemffiiledvfksesdvitveeikdepvqk (SEQ ID NO. 369) hikgleeddleevddlkgsildmlkgdmelgdmdkesledvttklgerveslk (SEQ ID NO. 370) hikgleeddleevddlkgsildmlkgdmelgdmdkesledvttk (SEQ ID NO. 371) hikgleeddleevddlkgsildmlkgdmelgdmdk (SEQ ID NO. 372) hikgleeddleevddlkgsildmlk (SEQ ID NO. 373) hiisgdadvlssalgmdeeqmktrkkaqrpk (SEQ ID NO. 374) hditttldewelkdveedkiek (SEQ ID NO. 375) kkleevhelk (SEQ ID NO. 376) kleevhelk (SEQ ID NO. 377) ktietdileekkkeiekdh (SEQ ID NO. 378) kkeiekdhfek (SEQ ID NO. 379) kdhfek (SEQ ID NO. 380) kfeeeaeeikh (SEQ ID NO. 381) c) 28 KDA ookinete surface antigen precursor Replikins: kdgdtkctlecaqgkkcikhksdhiihksd (SEQ ID NO. 382) kdgdtkctlecaqgkkcikhksdhiihksdhiihksdpnhkk (SEQ ID NO. 383) kdgdtkctlecaqgkkcikhksdhnhksdhiihksdpnhk (SEQ ID NO. 384) kdgdtkctlecaqgkkcikhksdhnhksdhnhk (SEQ ID NO. 385) kdgdtkctlecaqgkkcikhksdhnhk (SEQ ID NO. 386) kdgdtkctlecaqgkkcikhk (SEQ ID NO. 387) kdgdtkctlecaqgkk (SEQ ID NO. 388) kdgdtkctlecaqgk (SEQ ID NO. 389) kciqaecnykecgeqkcvwdgih (SEQ ID NO. 390) kecgeqkcvwdgih (SEQ ID NO. 391) hieckcnndyvltnryecepknkctsledtnk (SEQ ID NO. 392) d) Blood stage trophozoites and schizonts Replikins: ksdhnhksdhnhksdhnhksdhnhksdpnhkkknnnnnk (SEQ ID NO. 393) ksdhnhksdhnhksdhnhksdpnhkkknnnnnk (SEQ ID NO. 394) ksdhnhksdhnhksdpnhkkknnnnnk (SEQ ID NO. 395) ksdhnhksdpnhkkknnnnnk (SEQ ID NO. 396) kkknnnnnkdnksdpnhk (SEQ ID NO. 397) kknnnnnkdnksdpinhk (SEQ ID NO. 398) knnnnnkdnksdpnhk (SEQ ID NO. 399) kdnksdpnhk (SEQ ID NO. 400) ksdpnhk (SEQ ID NO. 401) hslyalqqneeyqkvknekdqneikkikqlieknk (SEQ ID NO. 402) hslyalqqneeyqkvknekdqneikkik (SEQ ID NO. 403) hslyalqqneeyqkvknekdqneikk (SEQ ID NO. 404) hslyalqqneeyqkvknekdqneik (SEQ ID NO. 405) hklenleemdk (SEQ ID NO. 406) khfddntneqk (SEQ ID NO. 407) kkeddekh (SEQ ID NO. 408) keennkkeddekh (SEQ ID NO. 409) ktssgilnkeennkkeddekh (SEQ ID NO. 410) knihikk (SEQ ID NO. 411) hikkkegidigyk (SEQ ID NO. 412) kkmwtcklwdnkgrieitknih (SEQ ID NO. 413 ) kkgiqwnllkkmwtcklwdnkgneitknih (SEQ ID NO. 414 ) kekkdsnenrkldcqkedkknpnklkkieytnkithffkaknnkqqnnvth (SEQ ID NO. 415) kkdsnenrkkkqkedkknpnklkkieytnkithffkaknnkqqnnvth (SEQ ID NO. 416) kdsnenrkkkqkedkknpnklkkieytnkithffkaknnkqqnnvth (SEQ ID NO. 417) kkqkedkknpnklklkkieytnkithffkaknnkqqnnvth (SEQ ID NO. 418) kqkedkknpnklklkkieytnkithffkaknnkqqnnvth (SEQ ID NO. 419) kedkknpnklklkkieytnkithffkaknnkqqnnvth (SEQ ID NO. 420) knpnklklkkieytnkithffkaknnkqqnnvth (SEQ ID NO. 421) kkieytnkithffkaknnkqqnnvth (SEQ ID NO. 422) kieytnkithffkaknnkqqnnvth (SEQ ID NO. 423) kithffkaknnkqqnnvth (SEQ ID NO. 424) htnnedikndnskdikndnskdikndnskdikndnnedikndnskdik (SEQ ID NO. 425) hknnedikndnskdikndnskdikndnskdikndnnedikndnsk (SEQ ID NO. 426) hknnedikndnskdikndnskdikndnskdikndnnedik (SEQ ID NO. 427) hknnedikndnskdikndnskdikndnskdik (SEQ ID NO. 428) hknnedikndnskdikndnskdikndnsk (SEQ ID NO. 429) hknnedikndnskdikndnskdik (SEQ ID NO. 430) hknnedikndnskdikndnsk (SEQ ID NO. 431) hknnedikndnskdik (SEQ ID NO. 432) hknnedik (SEQ ID NO. 433) kkyddlqnkynilnklknsleekneelkkyh (SEQ ID NO. 434) kyddlqnkynilnklknsleekneelkkyh (SEQ ID NO. 435) kynilnklknsleekneelkkyh (SEQ ID NO. 436) klknsleekneelkkyh (SEQ ID NO. 437) knsleekneelkkyh (SEQ ID NO. 438) kneelkkyh (SEQ ID NO. 439) hmgnnqdinenvynikpqefkeeeeedismvntkk (SEQ ID NO. 440) knsnelkrindnffklh (SEQ ID NO. 441) kpclykkckisqclykkckisqvwwcmpvkdtfhtyernnvlnskienniekiph (SEQ ID NO. 442) hinneytnknpkncllykneernyndnnikdyinsmnfkk (SEQ ID NO. 443) hinneytnknpkncllykneernyndnnikdyinsmnfk (SEQ ID NO. 444) hinneytnknpkncllyk (SEQ ID NO. 445) knktnqskgvkgeyekkketngh (SEQ ID NO. 446) ktnqskgvkgeyekkketngh (SEQ ID NO. 447) kgvkgeyekkketngh (SEQ ID NO. 448) kgeyekkketngh (SEQ ID NO. 449) ksgmytnegnkscecsykkkssssnkvh (SEQ ID NO. 450) kscecsykkkssssnkvh (SEQ ID NO. 451) kkkssssnkvh (SEQ ID NO. 452) kkssssnkvh (SEQ ID NO. 453) kssssnkvh (SEQ ID NO. 454) himlksgmytnegnkscecsykkkssssnk (SEQ ID NO. 455) himlksgmytnegnkscecsykkk (SEQ ID NO. 456) himlksgmytnegnkscecsykk (SEQ ID NO. 457) himlksgmytnegnkscecsyk (SEQ ID NO. 458) kplaklrkrektqinktkyergdviidnteiqkiiirdyhetlnvhkldh (SEQ ID NO. 459) krektqinktkyergdviidnteiqkiiirdyhetlnvhkldh (SEQ ID NO. 460) ktqinktkyergdviidnteiqkiiirdyhetlnvhkldh (SEQ ID NO. 461) kplaklrkrektqinktkyergdviidnteiqkiiirdyhetlnvh (SEQ ID NO. 462) kplaklrkrektqinktkyergdviidnteiqkiiirdyh (SEQ ID NO. 463) klrkrektqinktkyergdviidnteiqkiiirdyh (SEQ ID NO. 464) krektqinktkyergdviidnteiqkiiirdyh (SEQ ID NO. 465) ktqinktkyergdviidnteiqkiiirdyh (SEQ ID NO. 466) kkdkekkkdsnenrkkkqkedkknpndnklkkieytnkith (SEQ ID NO. 467) kdkekkkdsnenrkkkqkedkknpndnklkkieytnkith (SEQ ID NO. 468) kekkkdsnenrkkkqkedkknpndnklkkieytnkith (SEQ ID NO. 469) kkkdsnenrkkkqkedkknpndnklkkieytnkith (SEQ ID NO. 470) kkdsnenrkkkqkedkknpndnklkkieytnkith (SEQ ID NO. 471) kdsnenrkkkqkedkknpndnklkkieytnkith (SEQ ID NO. 472) kkkqkedkknpndnklkkieytnkith (SEQ ID NO. 473) kkqkedkknpndnklkkieytnkith (SEQ ID NO. 474) kqkedkknpndnklkkieytnkith (SEQ ID NO. 475) kedkknpndnklkkieytnkith (SEQ ID NO. 476) kknpndnklkkieytnkith (SEQ ID NO. 477) knpndnklkkieytnkith (SEQ ID NO. 478) klkkieytnkith (SEQ ID NO. 479) kkieytnkith (SEQ ID NO. 480) kieytnkith (SEQ ID NO. 481) hgqikiedvnnenfnneqmknkyndeekmdiskskslksdflek (SEQ ID NO. 482) hgqikiedvnnenfnneqmknkyndeekmdiskskslk (SEQ ID NO. 483) hgqikiedvnnenfnneqmknkyndeekmdisksk (SEQ ID NO. 484) hgqikiedvmienfnneqmknkyndeekmdisk (SEQ ID NO. 485) kkyddlqnkynilnklknsleekneelkkyh (SEQ ID NO. 486) kyddlqnkynilnklknsleekneelkkyh (SEQ ID NO. 487) kynilnklknsleekneelkkyh (SEQ ID NO. 488) klknsleekneelkkyh (SEQ ID NO. 489) knsleekneelkkyh (SEQ ID NO. 490) kneelkkyh (SEQ ID NO. 491) hmgnnqdinenvynikpqefkeeeeedismvntkkcddiqenik (SEQ ID NO. 492) ktnlyniynnknddkdnildnenreglylcdvmknsnelkrindnffklh (SEQ ID NO. 493) knsnelkrindnffklh (SEQ ID NO. 494) krindnffklh (SEQ ID NO. 495) himieytnknpkncllykneernyndnnikdyinsmnfkk (SEQ ID NO. 496) himieytnknpkncllykneernyndnnikdyinsmnfk (SEQ ID NO. 497) hinneytnknpkncllyk (SEQ ID NO. 498) kpclykkckisqvwwcmpvkdtfhtyernnvlnskienniekiph (SEQ ID NO. 499) kckisqvwwcmpvkdtfhtyernnvlnskienniekiph (SEQ ID NO. 500) kienniekiph (SEQ ID NO. 501) knktngskgvkgeyekkketngh (SEQ ID NO. 502) ktngskgvkgeyekkketngh (SEQ ID NO. 503) kgvkgeyekkketngh (SEQ ID NO. 504) kgeyekkketngh (SEQ ID NO. 505) ktiekinkskswffeeldeidkplaklrkrektqinktkyergdviidnteiqkiirdyh (SEQ ID NO. 506) kinkskswffeeldeidkplaklrkrektqinktkyergdviidnteiqkiirdyh (SEQ ID NO. 507) kplaklrkrektqinktkyergdviidnteiqkiirdyh (SEQ ID NO. 508) himlksqmytnegnkscecsykkkssssnkvh (SEQ ID NO. 509) klrkrektqinktkyergdviidnteiqkiirdyh (SEQ ID NO. 510) krektqinktkyergdviidnteiqkiirdyh (SEQ ID NO. 511) ktqinktkyergdviidnteiqkiirdyh (SEQ ID NO. 512) kplaklrkrektqinktkyergdviidnteiqkiirdyhtlnvhkldh (SEQ ID NO. 513) klrkrektqinktkyergdviidnteiqkiirdyhtlnvhkldh (SEQ ID NO. 514) krektqinktkyergdviidnteiqkiirdyhtlnvhkldh (SEQ ID NO. 515) ktqinktkyergdviidnteiqkiirdyhtlnvhkldh (SEQ ID NO. 516) kplaklrkrektqinktkyergdviidnteiqkiirdyhtlnvh (SEQ ID NO. 517) klrkrektqinktkyergdviidnteiqkiirdyhtlnvh (SEQ ID NO. 518) krektqinktkyergdviidnteiqkiirdyhtlnvh (SEQ ID NO. 519) ktqinktkyergdviidnteiqkiirdyhtlnvh (SEQ ID NO. 520) himlksqmytnegnkscecsykkkssssnkvh (SEQ ID NO. 521) ksqmytnegnkscecsykkkssssnkvh (SEQ ID NO. 522) kscecsykkkssssnkvh (SEQ ID NO. 523) kkkssssnkvh (SEQ ID NO. 524) kkssssnkvh (SEQ ID NO. 525) kssssnkvh (SEQ ID NO. 526) himlksqmytnegnkscecsykkkssssnk (SEQ ID NO. 527) himlksqmytnegnkscecsykkk (SEQ ID NO. 528) himlksqmytnegnkscecsykk (SEQ ID NO. 529) himlksqmytnegnkscecsyk (SEQ ID NO. 530) hnnhniqiykdkrinfmnphkvmyhdnmsknertek (SEQ ID NO. 531) hnnhniqiykdkrinfmnphkvmyhdnmsk (SEQ ID NO. 532) hnnhniqiykdkrinfmnphk (SEQ ID NO. 533) hkvmyhdnmsknertek (SEQ ID NO. 534) hkvmyhdnmsk (SEQ ID NO. 535)

[0109] Synthetic Replikin vaccines, based on Replikins such as the glioma Replikin (SEQ ID NO.: 1) “kagvaflhkk” or the hepatitis C Replikin (SEQ ID NO.: 18) “hyppkpgcivpak”, or HIV Replikins such as (SEQ ID NO.: 5) “kcfncgkegh” or (SEQ ID NO.: 6) “kvylawvpahk” or preferably, an influenza vaccine based on conserved and/or emerging or re-emerging Replikin(s) over a given time period may be used to augment antibody concentration in order to lyse the respective virus infected cells and release virus extracellularly where chemical treatment can then be effective. Similarly, a malaria vaccine, based on Replikins observed in Plasmodium falciparum malaria antigens on the merozoite surface or within the parasitophorous vacuole, for example, can be used to generate cytotoxic antibodies to malaria. Recognin and/or Replikin peptides may be administered to a subject to induce the immune system of the subject to produce anti-Replikin antibodies. Generally, a 0.5 to about 2 mg dosage, preferably a 1 mg dosage of each peptide is administered to the subject to induce an immune response. Subsequent dosages may be administered if desired.

[0110] In another embodiment of the invention, isolated Replikin peptides may be used to generate antibodies, which may be used, for example to provide passive immunity in an individual. Passive immunity to the strain of influenza identified by the method of the invention to be the most likely cause of future influenza infections may be obtained by administering antibodies to Replikin sequences of the identified strain of influenza virus to patients in need. Similarly, passive immunity to malaria may be obtained by administering antibodies to Plasmodium falciparum Replikin(s).

[0111] Various procedures known in the art may be used for the production of antibodies to Replikin sequences. Such antibodies include but are not limited to polyclonal, monoclonal, chimeric, humanized, single chain, Fab fragments and fragments produced by an Fab expression library. Antibodies that are linked to a cytotoxic agent may also be generated. Antibodies may also be administered in combination with an antiviral agent. Furthermore, combinations of antibodies to different Replikins may be administered as an antibody cocktail.

[0112] For the production of antibodies various host animals may be immunized by injection with a Replikin peptide or a combination of Replikin peptides, including but not limited to rabbits, mice, rats, and larger mammals. Various adjuvants may be used to enhance the immunological response, depending on the host species, including but not limited to Freund's (complete and incomplete), mineral gels, such as aluminum hydroxide, surface active substances such as lysolecithin, pluronic polyols, polyanions, peptides, oil emulsions, key limpet hemocyanin, dintrophenol, and potentially useful human adjuvants such as BCG and Corynebacterium parvum.

[0113] Monoclonal antibodies to Replikins may be prepared by using any technique that provides for the production of antibody molecules. These include but are not limited to the hybridoma technique originally described by Kohler and Milstein, (Nature, 1975, 256:495-497), the human B-cell hybridoma technique (Kosbor et al., 1983, Immunology Today, 4:72), and the EBV hybridoma technique (Cole et al., Monoclonal Antibodies and Cancer Therapy, Alan R. Liss, Inc., pp. 77-96). In addition, techniques developed for the production of chimeric antibodies (Morrison et al., 1984, Proc. Nat. Acad. Sci USA, 81:6851-6855) or other techniques may be used. Alternatively, techniques described for the production of single chain antibodies (U.S. Pat. No. 4,946,778) can be adapted to produce Replikin-specific single chain antibodies.

[0114] Particularly useful antibodies of the invention are those that specifically bind to Replikin sequences contained in peptides and/or polypeptides of influenza virus. For example, antibodies to any of peptides observed to be present in an emerging or re-emerging strain of influenza virus and combinations of such antibodies are useful in the treatment and/or prevention of influenza. Similarly, antibodies to any replikins present on malaria antigens and combinations of such antibodies are useful in the prevention and treatment of malaria.

[0115] Antibody fragments which contain binding sites for a Replikin may be generated by known techniques. For example, such fragments include but are not limited to F(ab′)₂ fragments which can be produced by pepsin digestion of the antibody molecules and the Fab fragments that can be generated by reducing the disulfide bridges of the F(ab′)₂ fragments. Alternatively, Fab expression libraries can be generated (Huse et al., 1989, Science, 246:1275-1281) to allow rapid and easy identification of monoclonal Fab fragments with the desired specificity.

[0116] The fact that antimalignin antibody is increased in concentration in human malignancy regardless of cancer cell type (FIG. 5), and that this antibody binds to malignant cells regardless of cell type now may be explained by the presence of the Replikin structures herein found to be present in most malignancies (FIG. 1 and Table 2). Population studies have shown that antimalignin antibody increases in concentration in healthy adults with age, and more so in high-risk families, as the frequency of cancer increases. An additional two-fold or greater antibody increase which occurs in early malignancy has been independently confirmed with a sensitivity of 97% in breast cancers 1-10 mm in size. Shown to localize preferentially in malignant cells in vivo, histochemically the antibody does not bind to normal cells but selectively binds to (FIG. 4a,b) and is highly cytotoxic to transformed cells in vitro (FIGS. 4c-f). Since in these examples the same antibody is bound by several cell types, that is, brain glioma, hematopoietic cells (leukemia), and small cell carcinoma of lung, malignant Replikin class unity is again demonstrated.

[0117] Antimalignin does not increase with benign proliferation, but specifically increases only with malignant transformation and replication in breast in vivo and returns from elevated to normal values upon elimination of malignant cells (FIG. 5). Antimalignin antibody concentration has been shown to relate quantitatively to the survival of cancer patients, that is, the more antibody, the longer the survival. Taken together, these results suggest that anti-Replikin antibodies may be a part of a mechanism of control of cell transformation and replication. Augmentation of this immune response may be useful in the control of replication, either actively with synthetic Replikins as vaccines, or passively by the administration of anti-Replikin antibodies, or by the introduction of non-immune based organic agents, such as for example, carbohydrates, lipids and the like, which are similarly designed to target the Replikin specifically. For organisms such as diatom plankton, foot and mouth disease virus, tomato leaf curl gemini virus, hepatitis B and C, HIV, influenza virus and malignant cells, identified constituent Replikins are useful as vaccines, and also may be usefully targeted for diagnostic purposes. Blood collected for transfusions, for example, may be screened for contamination of organisms, such as HIV, by screening for the presence of Replikins shown to be specific for the contamination organism. Also, screening for Replikin structures specific for a particular pathological organism, e.g., anthrax., leads to diagnostic detection of the organism in body tissue or in the environment.

[0118] The Replikin sequence structure is associated with the function of replication. Thus, whether the Replikins of this invention are used for targeting sequences that contain Replikins for the purpose of diagnostic identification, promoting replication, or inhibiting or attacking replication, for example, the structure-function relationship of the Replikin is fundamental. Thus, while the structure of the Replikin may be a part of a larger protein sequence, which may have been previously identified, it is preferable to utilize only the specific Replikin structure when seeking to induce antibodies that will recognize and attach to the Replikin fragment and thereby cause destruction of the cell. Even though the larger protein sequence may be known in the art as having a “replication associated function,” vaccines using the larger protein often have failed or proven ineffective, even though they contain one or more Replikin sequences.

[0119] Although the present inventors do not wish to be held to a single theory, the studies herein suggest that the prior art vaccines are ineffective because they are based on the use of the larger protein sequence. The larger protein sequence invariably has one or more epitopes (independent antigenic sequences that can induce specific antibody formation); Replikin structures usually comprise one of these potential epitopes. The presence of other epitopes within the larger protein may interfere with adequate formation of antibodies to the Replikin, by “flooding” the immune system with irrelevant antigenic stimuli which may preempt the Replikin antigens, See, e.g., Webster, R. G., J. Immunol., 97(2):177-183 (1966); and Webster et al., J. Infect. Dis., 134:48-58, 1976; Klenerman et al, Nature 394:421-422 (1998) for a discussion of the well-known phenomenon “original antigenic sin”). The formation of an antibody to a non-Replikin epitope may allow binding to the cell, but not necessarily lead to cell destruction. The presence of structural “decoys” on the C-termini of malaria proteins is another aspect of this ability of other epitopes to interfere with binding of effective anti-Replikin antibodies, since the decoy epitopes have many lysine residues, but no histidine residues. Thus, decoy epitopes may bind anti-Replikin antibodies, but keep the antibodies away from histidine-bound respiratory enzymes.

[0120] It is well known in the art that in the course of antibody production against a “foreign” protein, the protein is first hydrolyzed into smaller fragments. Usually fragments containing from about six to ten amino acids are selected for antibody formation. Thus, if hydrolysis of a protein does not result in Replikin-containing fragments, anti-Replikin antibodies will not be produced. In this regard, it is interesting that Replikins contain lysine residues located six to ten amino acids apart, since lysine residues are known to bind to membranes.

[0121] Furthermore, Replikin sequences contain at least one histidine residue. Histidine is frequently involved in binding to redox centers. Thus, an antibody that specifically recognizes a Replikin sequence has a better chance of inactivating or destroying the cell in which the Replikin is located, as seen with anti-malignin antibody, which is perhaps the most cytotoxic antibody yet described, being active at picograms per cell.

[0122] One of the reasons that vaccines directed towards a particular protein antigen of a disease causing agent have not been fully effective in providing protection against the disease (such as foot and mouth vaccine which has been developed against the VP1 protein or large segments of the VP1 protein) is that antibody to the Replikins have not been produced. That is, either epitopes other than Replikins present in the larger protein fragments may interfere according to the phenomenon of “original antigenic sin”, and/or because the hydrolysis of larger protein sequences into smaller sequences for processing to produce antibodies results in loss of integrity of any Replikin structure that is present, e.g., the Replikin is cut in two and/or the histidine residue is lost in the hydrolytic processing. The present studies suggest that for an effective vaccine to be produced, the Replikin sequences, and no other epitope, should be used as the vaccine. For example, a vaccine of the invention can be generated using any one of the Replikin peptides identified by the three point recognition system. Particularly preferred peptides for an influenza vaccine include peptides that have been demonstrated to be conserved over a period of one or more years, preferably about three years or more, and/or which are present in a strain of influenza virus shown to have the highest increase in concentration of Replikins relative to Replikin concentration in other influenza virus strains, e.g., an emerging strain. The increase in Replikin concentration preferably occurs over a period of at least about six months to one year, preferably at least about two years or more, and most preferably about three years or more. Among the preferred Replikin peptides for use in an influenza virus vaccine are those replikins observed to “re-emerge” after an absence from the hemagglutinin amino acid sequence for one or more years.

[0123] The Replikin peptides of the invention, alone or in various combinations are administered to a subject, preferably by i.v. or intramuscular injection, in order to stimulate the immune system of the subject to produce antibodies to the peptide. Generally the dosage of peptides is in the range of from about 0.1 μg to about 10 mg, preferably about 10 μg to about 1 mg, and most preferably about 50 μg to about 500 ug. The skilled practitioner can readily determine the dosage and number of dosages needed to produce an effective immune response.

[0124] Replikin DNA or RNA may have a number of uses for the diagnosis of diseases resulting from infection with a virus, bacterium or other Replikin encoding agent. For example, Replikin nucleotide sequences may be used in hybridization assays of biopsied tissue or blood, e.g., Southern or Northern analysis, including in situ hybridization assays, to diagnose the presence of a particular organism.

[0125] Also within the scope of the invention are oligoribonucleotide sequences, that include antisense RNA and DNA molecules and ribozymes that function to inhibit the translation of Replikin- or recognin-containing mRNA. Both antisense RNA and DNA molecules and ribozymes may be prepared by any method known in the art. The antisense molecules can be incorporated into a wide variety of vectors for delivery to a subject. The skilled practitioner can readily determine the best route of delivery, although generally i.v. or i.m. delivery is routine. The dosage amount is also readily ascertainable.

[0126] Particularly preferred antisense nucleic acid molecules are those that are complementary to a Replikin sequence contained in a mRNA encoding an influenza virus polypeptide, wherein the Replikin sequence comprises from 7 to about 50 amino acids including (1) at least one lysine residue located six to ten residues from a second lysine residue; (2) at least one histidine residue; and (3) at least 6% lysine residues. More preferred are antisense nucleic acid molecules that are complementary to a Replikin present in the coding strand of the gene or to the mRNA encoding the influenza virus hemagglutinin protein, wherein the antisense nucleic acid molecule is complementary to a nucleotide sequence encoding a Replikin that has been demonstrated to be conserved over a period of six months to one or more years and/or which are present in a strain of influenza virus shown to have an increase in concentration of Replikins relative to Replikin concentration in other influenza virus strains. The increase in Replikin concentration preferably occurs over a period of at least six months, preferably about one year, most preferably about two or three years or more.

[0127] In another embodiment of the invention, immune serum containing antibodies to one or more Replikins obtained from an individual exposed to one or more Replikins may be used to induce passive immunity in another individual or animal. Immune serum may be administered via i.v. to a subject in need of treatment. Passive immunity also can be achieved by injecting a recipient with preformed antibodies to one or more Replikins. Passive immunization may be used to provide immediate protection to individuals who have been exposed to an infectious organism. Administration of immune serum or preformed antibodies is routine and the skilled practitioner can readily ascertain the amount of serum or antibodies needed to achieve the desired effect.

[0128] In another aspect of the invention, Replikin structures are used to increase the replication of of organisms. The present invention demonstrates that in influenza virus, for example, increased replication associated with epidemics is associated with increased concentration of Replikins. The increase is due to 1) the reappearance of particular replikin structures, which were present in previous years, but which then disappeared for one or more years; and/or 2) by the appearance of new replikin compositions. In addition, in malaria Replikins, repetition of the same Replikin in a single protein occurs. Thus, the present invention provides methods and compositions for increasing the replication of organisms. For example, the production of crops which are critical to feeding large populations throughout the world, such as rice, for example, can be improved by increasing the concentration (number of Replikins/100 amino acid residues) of any particular strain of the food crop.

[0129] As an example, in the Oryza sativa strain of rice, catalase isolated from immature seeds was observed to contain three different Replikins within the 491 amino acid sequence of the protein. Thus, by using recombinant gene cloning techniques well known in the art, the concentration of Replikin structures in an organism, such as a food crop plant, can be increased, which will promote increased replication of the organism.

[0130] The present invention also provides methods for identifying Replikin sequences in an amino acid or nucleic acid sequence. Visual scanning of over four thousand sequences was performed in developing the present 3-point-recognition methods. However, data banks comprising nucleotide and/or amino acid sequences can also be scanned by computer for the presence of sequences meeting the 3 point recognition requirements.

[0131] The three point recognition method may also be modified to identify other useful compounds of covalently linked organic molecules, including other covalently linked amino acids, nucleotides, carbohydrates, lipids or combinations thereof. In this embodiment of the invention a sequence is screened for subsequences containing three or more desired structural characteristics. In the case of screening compounds composed of covalently linked amino acids, lipids or carbohydrates the subsequence of 7 to about 50 covalently linked units should contain (1) at least one first amino acid, carbohydrate or lipid residue located seven to ten residues from a second of the first amino acid, carbohydrate or lipid residue; (2) encoding at least one second amino acid, lipid or carbohydrate residue; and (3) at least 6% of the first amino acid, carbohydrate or lipid residue. In the case of screening nucleotide sequences, the subsequence of about 21 to about 150 nucleotides should contain (1) at least one codon encoding a first amino acid located within eighteen to thirty nucleotides from a second codon encoding the first amino acid residue; (2) at least one second amino acid residue; and (3) encodes at least 6% of said first amino acid residue.

[0132] According to another embodiment of the invention, the methods described herein may be performed by a computer. FIG. 6 is a block diagram of a computer available for use with the foregoing embodiments of the present invention. The computer may include a processor, an input/output device and a memory storing executable program instructions representing the 3-point-recognition methods of the foregoing embodiments. The memory may include a static memory, volatile memory and/or a nonvolatile memory. The static memory conventionally may be a read only memory (“ROM”) provided on a magnetic, or an electrical or optical storage medium. The volatile memory conventionally may be a random access memory (“RAM”) and may be integrated as a cache within the processor or provided externally from the processor as a separate integrated circuit. The non-volatile memory may be an electrical, magnetic or optical storage medium.

[0133] From a proteomic point of view the construction of a “3-point-recognition” template based on the new glioma peptide sequence led directly to identification of a biology-wide class of proteins having related structures and functions. The operation of the 3-point-recognition method resembles identification by the use of a “keyword” search; but instead of using the exact spelling of the keyword “kagvaflhkk” (SEQ ID NO.: 1) as in a typical sequence homology search, or in the nucleotide specification of an amino acid, an abstraction of the keyword delimited by the “3-point-recognition” parameters is used. This delimited abstraction, although derived from a single relatively short amino acid sequence leads to identification of a class of proteins with structures that are defined by the same specifications. That particular functions, in this case transformation and replication, in addition to structures, turn out also to be shared by members of the exposed class suggests that these structures and functions are related. Thus, from this newly identified short peptide sequence, a molecular recognition ‘language’ has been formulated, which previously has not been described. Further, the sharing of immunological specificity by diverse members of the class, as here demonstrated for the cancer Replikins, suggests that B cells and their product antibodies recognize Replikins by means of a similar recognition language. Since “3-point-recognition” is a proteomic method that specifies a particular class of proteins, using three or more different recognition points for other peptides similarly should provide useful information concerning other proteins classes. Further, the “3-point-recognition” method is applicable to other recognins, for example to the TOLL ‘innate’ recognition of lipopolyssacharides of organisms.

[0134] Several embodiments of the present invention are specifically illustrated and described herein. However, it will be appreciated that modifications and variations of the present invention are encompassed by the above teachings and within the purview of the appended claims without departing from the spirit and intended scope of the invention.

EXAMPLE 1

[0135] Process for Extraction, Isolation and Identification of Replikins and the Use of Replikins to Target, Label or Destroy Replikin-Containing Organisms

[0136] a) Algae

[0137] The following algae were collected from Bermuda water sites and either extracted on the same day or frozen at −20 degrees C. and extracted the next day. The algae were homogenized in a cold room (at 0 to 5 degrees C.) in 1 gram aliquots in neutral buffer, for example 100 cc. of 0.005M phosphate buffer solution, pH 7 (“phosphate buffer”) for 15 minutes in a Waring blender, centrifuged at 3000 rpm, and the supernatant concentrated by perevaporation and dialyzed against phosphate buffer in the cold to produce a volume of approximately 15 ml. The volume of this extract solution was noted and an aliquot taken for protein analysis, and the remainder was fractionated to obtain the protein fraction having a pK range between 1 and 4. The preferred method of fractionation is chromatography as follows:

[0138] The extract solution is fractionated in the cold room (4 degrees C.) on a DEAE cellulose (Cellex-D) column 2.5×11.0 cm, which has been equilibrated with 0.005M phosphate buffer. Stepwise eluting solvent changes are made with the following solutions:

[0139] Solution 1—4.04 g. NaH2PO4 and 0.5 g NaH2PO4 are dissolved in 15 litres of distilled water (0.005 molar, pH 7);

[0140] Solution 2—8.57 g. NaH2PO4 is dissolved in 2,480 ml. of distilled water;

[0141] Solution 3—17.1 g. of NaH2PO4 is dissolved in 2480 ml of distilled water (0.05 molar, pH 4.7);

[0142] Solution 4—59.65 g. of NaH2PO4 is dissolved in 2470 ml distilled water (0.175 molar);

[0143] Solution 5—101.6 g. of NaH2PO4 is dissolved in 2455 ml distilled water (pH 4.3);

[0144] Solution 6—340.2 g. of NaH2PO4 is dissolved in 2465 of distilled water (1.0 molar, pX-i 4.1);

[0145] Solution 7—283.63 g. of 80% phosphoric acid (H3PO4) is made up in 2460 ml of distilled water (1.0 molar, pH 1.0).

[0146] The extract solution, in 6 to 10 ml volume, is passed onto the column and overlayed with Solution 1, and a reservoir of 300 ml of Solution 1 is attached and allowed to drip by gravity onto the column. Three ml aliquots of eluant are collected and analyzed for protein content at OD 280 until all of the protein to be removed with Solution 1 has been removed from the column. Solution 2 is then applied to the column, followed in succession by Solutions 3, 4, 5, 6 aid 7 until all of the protein which can, be removed with each Solution is removed from the column. The eluates from Solution 7 are combined, dialyzed against phosphate buffer, the protein content determined of both dialysand and dialyzate, and both analyzed by gel electrophoresis. One or two bands of peptide or protein of molecular weight between 3,000 and 25,000 Daltons are obtained in Solution 7. For example the algae Caulerpa mexicana, Laurencia obtura, Cladophexa prolifera, Sargassum natans, Caulerpa verticillata, Halimeda tuna, and Penicillos capitatus, after extraction and treatment as above, all demonstrated in Solution 7 eluates sharp peptide bands in this molecular weight region with no contaminants. These Solution 7 proteins or their eluted bands are hydrolyzed, and the amino acid composition determined. The peptides so obtained, which have a lysine composition of 6% or greater are Replikin precursors. These Replikin peptide precursors are then determined for amino acid sequence and the replikins are determined by hydrolysis and mass spectrometry as detailed in U.S. Pat. No. 6,242,578 B1. Those which fulfill the criteria defined by the “3-point-recognition” method are identified as Replikins. This procedure can also be applied to obtain yeast, bacterial and any plant Replikins.

[0147] b) Virus

[0148] Using the same extraction and column chromatography separation methods as above in a) for algae, Replikens in virus-infected cells are isolated and identified.

[0149] c) Tumor Cells In Vivo and In Vitro Tissue Culture

[0150] Using the same extraction and column chromatography separation methods as above in a) for algae, Replikins in tumor cells are isolated and identified. For example, Replikin precursors of Astrocytin isolated from malignant brain tumors, Malignin (Aglyco lOB) isolated from glioblastoma tumor cells in tissue cu0lture, MCF7 mammary carcinoma cells in tissue culture, and P₃J Lymphoma cells in tissue culture each treated as above in a) yielded Replikin precursors with lysine content of 9.1%, 6.7%, 6.7%, and 6.5% respectively. Hydrolysis and mass spectrometry of Aglyco lOB as described in Example 10 U.S. Pat. No. 6,242,578 B1 produced the amino acid sequence, ykagvaflhkkndiide the 16-mer Replikin.

EXAMPLE 2

[0151] As an example of diagnostic use of Replikins: Aglyco lOB or the 16-mer Repliken may be used as antigen to capture and quantify the amount of its corresponding antibody present in serum for diagnostic purposes are as shown in FIGS. 2, 3, 4 and 7 of U.S. Pat. No. 6,242,578 B1.

[0152] As an example of the production of agents to attach to Replikins for labeling, nutritional or destructive purposes: Injection of the 16-mer Replikin into rabbits to produce the specific antibody to the 16-mer Replikin is shown in Example 6 and FIGS. 9A and 9B of U.S. Pat. No. 6,242,578 B1.

[0153] As an example of the use of agents to label Replikins: The use of antibodies to the 16-mer Replikin to label specific cells which contain this Replikin is shown in FIG. 5 and Example 6 of U.S. Pat. No. 6,242,578 B1.

[0154] As an example of the use of agents to destroy Replikins: The use of antibodies to the 16-mer Replikin to inhibit or destroy specific cells which contain this Replikin is shown in FIG. 6 of U.S. Pat. No. 6,242,578 B1.

EXAMPLE 3

[0155] Analysis of sequence data of isolates of influenza virus hemagglutinin protein or neuramimidase protein for the presence and concentration of Replikins is carried out by visual scanning of sequences or through use of a computer program based on the 3-point recognition system described herein. Isolates of influenza virus are obtained and the amino acid sequence of the influenza hemagglutinin and/or neuramimidase protein is obtained by any art known method, such as by sequencing the hemagglutinin or neuramimidase gene and deriving the protein sequence therefrom. Sequences are scanned for the presence of new Replikins, conservation of Replikins over time and concentration of Replikins in each isolate. Comparison of the Replikin sequences and concentrations to the amino acid sequences obtained from isolates at an earlier time, such as about six months to about three years earlier, provides data that are used to predict the emergence of strains that are most likely to be the cause of influenza in upcoming flu seasons, and that form the basis for seasonal influenza peptide vaccines or nucleic acid based vaccines. Observation of an increase in concentration, particularly a stepwise increase in concentration of Replikins in a given strain of influenza virus for a period of about six months to about three years or more is a predictor of emergence of the strain as a likely cause of influenza epidemic or pandemic in the future.

[0156] Peptide vaccines or nucleic acid-based vaccines based on the Replikins observed in the emerging strain are generated. An emerging strain is identified as the strain of influenza virus having the highest increase in concentration of replikin sequences within the hemagglutinin and/or neuramimidase sequence during the time period. Preferably, the peptide or nucleic acid vaccine is based on or includes any Replikin sequences that are observed to be conserved in the emerging strain. Conserved replikins are preferably those Replikin sequences which are present in the hemagglutinin or neuramimidase protein sequence for about two years and preferably longer. The vaccines may include any combination of Replikin sequences identified in the emerging strain.

[0157] For vaccine production, the Replikin peptide or peptides identified as useful for an effective vaccine are synthesized by any method, including chemical synthesis and molecular biology techniques, including cloning, expression in a host cell and purification therefrom. The peptides are preferably admixed with a pharmaceutically acceptable carrier in an amount determined to induce a therapeutic antibody reaction thereto. Generally, the dosage is about 0.1 μg to about 10 mg.

[0158] The influenza vaccine is preferably administered to a patient in need thereof prior to the onset of “flu season.” Influenza flu season generally occurs in late October and lasts through late April. However, the vaccine may be administered at any time during the year. Preferably, the influenza vaccine is administered once yearly, and is based on Replikin sequences observed to be present, and preferably conserved in the emerging strain of influenza virus. Another preferred Replikin for inclusion in an influenza vaccine is a Replikin demonstarated to have re-emerged in a strain of influenza after an absence of one or more years.

EXAMPLE 4

[0159] Analysis of sequence data of isolates of Plasmodium falciparum antigens for the presence and concentration of Replikins is carried out by visual scanning of sequences or through use of a computer program based on the 3-point recognition system described herein. Isolates of Plasmodium falciparum are obtained and the amino acid sequence of the protein is obtained by any art known method, such as by sequencing the gene and deriving the protein sequence therefrom. Sequences are scanned for the presence of Replikins, conservation of Replikins over time and concentration of Replikins in each isolate. This information provides data that are used to form the basis for anti-malarial peptide vaccines or nucleic acid based vaccines.

[0160] Peptide vaccines or nucleic acid-based vaccines based on the Replikins observed in the malaria causing organism are generated. Preferably, the peptide or nucleic acid vaccine is based on or includes any Replikin sequences that are observed to be present on a surface antigen of the organism. The vaccines may include any combination of Replikin sequences identified in the malaria causing strain.

[0161] For vaccine production, the Replikin peptide or peptides identified as useful for an effective vaccine are synthesized by any method, including chemical synthesis and molecular biology techniques, including cloning, expression in a host cell and purification therefrom. The peptides are preferably admixed with a pharmaceutically acceptable carrier in an amount determined to induce a therapeutic antibody reaction thereto. Generally, the dosage is about 0.1 μg to about 10 mg.

[0162] Then malaria vaccine is preferably administered to a patient in need thereof at any time during the year, and particularly prior to travel to a tropical environment.

1 535 1 10 PRT Artificial Sequence Description of Artificial Sequence Synthetic glioma replikin 1 Lys Ala Gly Val Ala Phe Leu His Lys Lys 1 5 10 2 13 PRT Saccharomyces cerevisiae 2 His Ser Ile Lys Arg Glu Leu Gly Ile Ile Phe Asp Lys 1 5 10 3 10 PRT Gemini vinis virus 3 His Lys Gln Lys Ile Val Ala Pro Val Lys 1 5 10 4 16 PRT Unknown Organism Description of Unknown Organism Virus recognin 4 Tyr Lys Ala Gly Val Ala Phe Leu His Lys Lys Asn Asp Ile Asp Glu 1 5 10 15 5 10 PRT Human immunodeficiency virus type 1 5 Lys Cys Phe Asn Cys Gly Lys Glu Gly His 1 5 10 6 11 PRT Human immunodeficiency virus type 1 6 Lys Val Tyr Leu Ala Trp Val Pro Ala His Lys 1 5 10 7 10 PRT Human immunodeficiency virus type 2 7 Lys Cys Trp Asn Cys Gly Lys Glu Gly His 1 5 10 8 11 PRT Maize streak virus 8 Lys Tyr Ile Val Cys Ala Arg Glu Ala His Lys 1 5 10 9 17 PRT Maize streak virus 9 Lys Glu Lys Lys Pro Ser Lys Asp Glu Ile Met Arg Asp Ile Ile Ser 1 5 10 15 His 10 9 PRT Staphylococcus aureus 10 Lys Lys Glu Lys Thr Thr His Asn Lys 1 5 11 10 PRT Bovine herpesvirus 4 11 His Lys Ile Asn Ile Thr Asn Gly Gln Lys 1 5 10 12 10 PRT Meleagrid herpesvirus 1 12 His Lys Asp Leu Tyr Arg Leu Leu Met Lys 1 5 10 13 15 PRT Unknown Organsim Description of Unknown Organism Virus recognin 13 Lys Phe Arg Ile Asn Ala Lys Asn Tyr Phe Leu Thr Tyr Pro His 1 5 10 15 14 19 PRT Unknown Organism Description of Unknown Organism Virus recognin 14 Lys Asn Leu Glu Thr Pro Val Asn Lys Leu Phe Ile Arg Ile Cys Arg 1 5 10 15 Glu Phe His 15 14 PRT Unknown Organism Description of Unknown Organism Virus recognin 15 His Pro Asn Ile Gln Ala Ala Lys Ser Ser Thr Asp Val Lys 1 5 10 16 19 PRT Unknown Organism Description of Unknown Organism Virus recognin 16 Lys Ser Ser Thr Asp Val Lys Ala Tyr Met Asp Lys Asp Gly Asp Val 1 5 10 15 Leu Asp His 17 21 PRT Unknown Organism Description of Unknown Organism Virus recognin 17 Lys Ala Ser Ala Leu Asn Ile Leu Arg Glu Lys Ala Pro Lys Asp Phe 1 5 10 15 Val Leu Gln Phe His 20 18 13 PRT Hepatitis C virus 18 His Tyr Pro Pro Lys Pro Gly Cys Ile Val Pro Ala Lys 1 5 10 19 4 PRT Homo sapiens 19 Tyr Lys Ala Gly 1 20 6 PRT Homo sapiens 20 Tyr Lys Ala Gly Val Ala 1 5 21 7 PRT Homo sapiens 21 Tyr Lys Ala Gly Val Ala Phe 1 5 22 7 PRT Homo sapiens 22 Tyr Lys Ala Gly Val Ala Phe 1 5 23 9 PRT Homo sapiens 23 Ala Gly Val Ala Phe His Lys Lys Asn 1 5 24 4 PRT Homo sapiens 24 Gly Val Ala Phe 1 25 3 PRT Homo sapiens 25 Val Ala Phe 1 26 7 PRT Homo sapiens 26 Val Ala Phe Leu His Lys Lys 1 5 27 7 PRT Homo sapiens 27 Val Ala Phe Leu His Lys Lys 1 5 28 9 PRT Homo sapiens 28 Val Ala Phe Leu His Lys Lys Asn Asp 1 5 29 8 PRT Homo sapiens 29 Val Ala Phe His Lys Lys Asn Asp 1 5 30 4 PRT Homo sapiens 30 Ala Phe Leu His 1 31 8 PRT Homo sapiens 31 His Lys Lys Asn Asp Ile Asp Glu 1 5 32 6 PRT Homo sapiens 32 Lys Lys Asn Asp Ile Asp 1 5 33 6 PRT Homo sapiens 33 Lys Asn Asp Ile Asp Glu 1 5 34 8 PRT Caldophera prolifera 34 Lys Ala Ser Lys Phe Thr Lys His 1 5 35 12 PRT Isolepis prolifera 35 Lys Ala Gln Ala Glu Thr Gly Glu Ile Lys Gly His 1 5 10 36 10 PRT Schizosaccharomyces pombe 36 Lys Ser Phe Lys Tyr Pro Lys Lys His Lys 1 5 10 37 10 PRT Oryza sativa 37 Lys Lys Ala Tyr Gly Asn Glu Leu His Lys 1 5 10 38 9 PRT Penicillium marneffei 38 Lys Val Asp Ile Val Thr His Gln Lys 1 5 39 12 PRT Diseula dcstructiva 39 Lys Leu Glu Glu Asp Ala Ala Tyr His Arg Lys Lys 1 5 10 40 17 PRT Ophiostoma novo-ulmi 40 Lys Val Ile Leu Pro Leu Arg Gly Asn Ile Lys Gly Ile Phe Phe Lys 1 5 10 15 His 41 11 PRT Entamoeba invadens 41 Lys Leu Ile Leu Lys Gly Asp Leu Asn Lys His 1 5 10 42 8 PRT Helicobacter pylori 42 Lys Ser Val His Ala Phe Leu Lys 1 5 43 9 PRT Mycoplasma pulmonis 43 Lys Val His Phe Phe Gln Leu Lys Lys 1 5 44 9 PRT Arabidopsis thaliana 44 Lys Asp His Asp Phe Asp Gly Asp Lys 1 5 45 11 PRT Arabidopsis thaliana 45 Lys Met Lys Gly Leu Lys Gln Lys Lys Ala His 1 5 10 46 12 PRT Arabidopsis thaliana 46 Lys Glu Leu Ser Ser Thr Thr Gln Glu Lys Ser His 1 5 10 47 9 PRT Feline immunodeficiency virus 47 His Leu Lys Asp Tyr Lys Leu Val Lys 1 5 48 7 PRT Rous sarcoma virus 48 Lys Lys Leu Arg His Glu Lys 1 5 49 7 PRT Avian sarcoma virus 49 Lys Lys Leu Arg His Asp Lys 1 5 50 7 PRT Homo sapiens 50 Lys Lys Leu Arg His Asp Lys 1 5 51 7 PRT Avian sarcoma virus 51 Lys Lys Leu Arg His Glu Lys 1 5 52 7 PRT Homo sapiens 52 Lys Lys Leu Arg His Glu Lys 1 5 53 8 PRT Homo sapiens 53 Lys Gln Ala His Glu Leu Ala Lys 1 5 54 8 PRT Polyama virus 54 Lys Thr His Arg Phe Ser Lys His 1 5 55 8 PRT Sindbis virus 55 Lys Asn Leu His Glu Lys Ile Lys 1 5 56 9 PRT Human papilloamavirus type 71 56 Lys His Arg Pro Leu Leu Gln Leu Lys 1 5 57 7 PRT Avian encephalomyelitis virus 57 Lys Ser Pro Asn His Val Lys 1 5 58 8 PRT Feline sarcoma virus 58 Lys Asn Ile His Leu Glu Lys Lys 1 5 59 8 PRT Homo sapiens 59 Lys Asn Ile His Leu Glu Lys Lys 1 5 60 10 PRT Polyoma virus 60 Lys Pro His Leu Ala Gln Ser Leu Glu Lys 1 5 10 61 9 PRT Polyoma virus 61 Lys Gln His Arg Glu Leu Lys Asp Lys 1 5 62 9 PRT Polyoma virus 62 Lys Gln His Arg Glu Leu Lys Asp Lys 1 5 63 12 PRT Murine leukemia virus 63 Lys Val Pro Val Leu Ile Ser Pro Thr Leu Lys His 1 5 10 64 13 PRT Human T-cell lymphotropic virus type 2 64 Lys Ser Leu Leu Leu Glu Val Asp Lys Asp Ile Ser His 1 5 10 65 13 PRT Homo sapiens 65 Lys Ala Gly Ile Thr Ile Met Val Lys Arg Glu Tyr His 1 5 10 66 8 PRT Homo sapiens 66 Lys Ser Gly Lys His Leu Gly Lys 1 5 67 9 PRT Homo sapiens 67 Lys Arg Arg Glu Gln Leu Lys His Lys 1 5 68 10 PRT Homo sapiens 68 Lys Ser Phe Glu Val Ile Lys Val Ile His 1 5 10 69 8 PRT Homo sapiens 69 Lys Lys Lys His Thr Val Lys Lys 1 5 70 9 PRT Homo sapiens 70 Lys Ala Gln Lys Asp His Leu Ser Lys 1 5 71 10 PRT Homo sapiens 71 His Leu Lys Arg Val Lys Asp Leu Lys Lys 1 5 10 72 11 PRT Homo sapiens 72 Lys Tyr Gly Ser Pro Lys His Arg Leu Ile Lys 1 5 10 73 13 PRT Papilloma virus type 11 73 Lys Leu Lys His Ile Leu Gly Lys Ala Arg Phe Ile Lys 1 5 10 74 12 PRT Homo sapiens 74 Lys Gly Asp His Val Lys His Tyr Lys Ile Arg Lys 1 5 10 75 13 PRT Homo sapiens 75 Lys Glu Lys Leu Arg Asp Val Met Val Asp Arg His Lys 1 5 10 76 15 PRT Homo sapiens 76 Lys Leu Gln Ala Arg Gln Gln Gln Leu Leu Lys Lys Ile Glu His 1 5 10 15 77 14 PRT Homo sapiens 77 Lys Lys Gly Asn Arg Val Ser Pro Thr Met Lys Val Thr His 1 5 10 78 9 PRT Homo sapiens 78 Lys Glu Ile Pro Leu His Phe Arg Lys 1 5 79 8 PRT Homo sapiens 79 Lys Lys Lys Pro His Ile Lys Lys 1 5 80 9 PRT Homo sapiens 80 Lys Thr Arg His Asp Pro Leu Ala Lys 1 5 81 10 PRT Homo sapiens 81 Lys His His Pro Lys Asp Asn Leu Ile Lys 1 5 10 82 10 PRT Homo sapiens 82 Lys His Lys Arg Lys Lys Phe Arg Gln Lys 1 5 10 83 10 PRT Homo sapiens 83 Lys Ala Gly Val Ala Phe Leu His Lys Lys 1 5 10 84 10 PRT Homo sapiens 84 Lys His Lys Arg Lys Lys Phe Arg Gln Lys 1 5 10 85 10 PRT Homo sapiens 85 Lys Lys Lys Ser Lys Lys His Lys Asp Lys 1 5 10 86 11 PRT Homo sapiens 86 His Lys Ser Glu Lys Pro Ala Leu Pro Arg Lys 1 5 10 87 14 PRT Homo sapiens 87 Lys Lys Lys Lys Pro Ser Arg Leu Lys Gly Asp Asn Glu Lys 1 5 10 88 16 PRT Homo sapiens 88 Lys Thr Lys Lys Gly Asn Arg Val Ser Pro Thr Met Lys Val Thr His 1 5 10 15 89 18 PRT Homo sapiens 89 Lys His Lys Glu Lys Met Ser Lys Asp Gly Lys Lys Lys Lys Lys Lys 1 5 10 15 Ser Lys 90 9 PRT Legionella sp. 90 Lys Ile His Leu Ile Ser Val Lys Lys 1 5 91 10 PRT Bacillus anthracis 91 His Val Lys Lys Glu Lys Glu Lys Asn Lys 1 5 10 92 9 PRT Bacillus anthracis 92 Lys His Ile Val Lys Ile Glu Val Lys 1 5 93 16 PRT Bacillus anthracis 93 Lys Lys Lys Lys Ile Lys Asp Ile Tyr Gly Lys Asp Ala Leu Leu His 1 5 10 15 94 8 PRT Bacillus anthracis 94 Lys Trp Glu Lys Ile Lys Gln His 1 5 95 18 PRT Bacillus anthracis 95 Lys Lys Leu Gln Ile Pro Pro Pro Ile Glu Pro Lys Lys Asp Asp Ile 1 5 10 15 Ile His 96 31 PRT Bacillus anthracis 96 His Asn Arg Tyr Ala Ser Asn Ile Val Glu Ser Ala Tyr Leu Leu Ile 1 5 10 15 Leu Asn Glu Trp Lys Asn Asn Ile Gln Ser Asp Leu Ile Lys Lys 20 25 30 97 24 PRT Bacillus anthracis 97 His Ala Val Asp Asp Tyr Ala Gly Tyr Leu Leu Asp Lys Asn Gln Ser 1 5 10 15 Asp Leu Val Thr Asn Ser Lys Lys 20 98 13 PRT Bacillus anthracis 98 His Ala Glu Arg Leu Lys Val Gln Lys Asn Ala Pro Lys 1 5 10 99 10 PRT Variola virus 99 Lys His Tyr Asn Asn Ile Thr Trp Tyr Lys 1 5 10 100 12 PRT Variola virus 100 Lys Tyr Ser Gln Thr Gly Lys Glu Leu Ile Ile His 1 5 10 101 17 PRT Variola virus 101 His Tyr Asp Asp Val Arg Ile Lys Asn Asp Ile Val Val Ser Arg Cys 1 5 10 15 Lys 102 11 PRT Variola virus 102 His Arg Phe Lys Leu Ile Leu Asp Ser Lys Ile 1 5 10 103 11 PRT Variola virus 103 Lys Glu Arg Gly His Asn Tyr Tyr Phe Glu Lys 1 5 10 104 8 PRT Influenza B virus 104 Lys Ser His Phe Ala Asn Leu Lys 1 5 105 11 PRT Influenza B virus 105 Lys Ser His Phe Ala Asn Leu Lys Gly Thr Lys 1 5 10 106 19 PRT Influenza B virus 106 Lys Ser His Phe Ala Asn Leu Lys Gly Thr Lys Thr Arg Gly Lys Leu 1 5 10 15 Cys Pro Lys 107 9 PRT Influenza B virus 107 His Glu Lys Tyr Gly Gly Leu Asn Lys 1 5 108 11 PRT Influenza B virus 108 His Glu Lys Tyr Gly Gly Leu Asn Lys Ser Lys 1 5 10 109 20 PRT Influenza B virus 109 His Glu Lys Tyr Gly Gly Leu Asn Lys Ser Lys Pro Tyr Tyr Thr Gly 1 5 10 15 Glu His Ala Lys 20 110 13 PRT Influenza B virus 110 His Ala Lys Ala Ile Gly Asn Cys Pro Ile Trp Val Lys 1 5 10 111 23 PRT Influenza B virus 111 His Ala Lys Ala Ile Gly Asn Cys Pro Ile Trp Val Lys Thr Pro Leu 1 5 10 15 Lys Leu Ala Asn Gly Thr Lys 20 112 29 PRT Influenza B virus 112 His Ala Lys Ala Ile Gly Asn Cys Pro Ile Trp Val Lys Thr Pro Leu 1 5 10 15 Lys Leu Ala Asn Gly Thr Lys Tyr Arg Pro Pro Ala Lys 20 25 113 32 PRT Influenza B virus 113 His Ala Lys Ala Ile Gly Asn Cys Pro Ile Trp Val Lys Thr Pro Leu 1 5 10 15 Lys Leu Ala Asn Gly Thr Lys Tyr Arg Pro Pro Ala Lys Leu Leu Lys 20 25 30 114 13 PRT Influenza B virus 114 His Phe Ala Asn Leu Lys Gly Thr Lys Thr Arg Gly Lys 1 5 10 115 17 PRT Influenza B virus 115 His Phe Ala Asn Leu Lys Gly Thr Lys Thr Arg Gly Lys Leu Cys Pro 1 5 10 15 Lys 116 16 PRT Influenza B virus 116 His Ser Asp Asn Glu Ile Gln Met Val Lys Leu Tyr Gly Asp Ser Lys 1 5 10 15 117 21 PRT Influenza B virus 117 His Ser Asp Asn Glu Ile Gln Asp Lys Met Val Lys Leu Tyr Gly Asp 1 5 10 15 Ser Lys Pro Gln Lys 20 118 19 PRT Influenza B virus 118 His Ser Asp Asn Glu Ile Gln Met Val Lys Leu Tyr Gly Asp Ser Lys 1 5 10 15 Pro Gln Lys 119 9 PRT Influenza B virus MOD_RES (2) ala or val 119 Lys Xaa Ser Ile Leu His Glu Val Lys 1 5 120 15 PRT Influenza B virus 120 Lys Cys Thr Gly Thr Ile Pro Ser Ala Lys Ala Ser Ile Leu His 1 5 10 15 121 18 PRT Influenza B virus 121 Lys Cys Thr Gly Thr Ile Pro Ser Ala Lys Ala Ser Ile Leu His Glu 1 5 10 15 Val Lys 122 16 PRT Influenza B virus 122 Lys Tyr Gly Gly Leu Asn Lys Ser Lys Pro Tyr Tyr Thr Gly Glu His 1 5 10 15 123 26 PRT Influenza B virus 123 Lys Val Trp Cys Ala Ser Gly Arg Ser Lys Val Ile Lys Gly Ser Leu 1 5 10 15 Pro Leu Ile Gly Glu Ala Asp Cys Leu His 20 25 124 10 PRT Influenza B virus 124 Lys Pro Tyr Tyr Thr Gly Glu His Ala Lys 1 5 10 125 18 PRT Influenza B virus 125 Lys Cys Met Gly Thr Ile Pro Ser Ala Lys Ala Ser Ile Leu His Glu 1 5 10 15 Val Lys 126 15 PRT Influenza B virus 126 His Asn Val Ile Asn Ala Glu Lys Ala Pro Gly Gly Pro Tyr Lys 1 5 10 15 127 16 PRT Influenza B virus 127 His Ser Asp Asn Glu Thr Gln Met Ala Lys Leu Tyr Gly Asp Ser Lys 1 5 10 15 128 18 PRT Influenza B virus 128 His Gly Val Ala Val Ala Ala Asp Leu Lys Ser Thr Gln Glu Ala Ile 1 5 10 15 Asn Lys 129 29 PRT Influenza B virus 129 His Gly Val Ala Val Ala Ala Asp Leu Lys Ser Thr Gln Glu Ala Ile 1 5 10 15 Asn Lys Asp Thr Ile Ser Thr Gln Glu Ala Ile Asn Lys 20 25 130 21 PRT Influenza B virus 130 Lys Leu Tyr Gly Asp Ser Lys Pro Gln Lys Phe Thr Ser Ser Ala Asn 1 5 10 15 Gly Val Thr Thr His 20 131 19 PRT Influenza B virus 131 His Ser Asp Asn Glu Thr Gln Met Ala Lys Leu Tyr Gly Asp Ser Lys 1 5 10 15 Pro Gln Lys 132 13 PRT Influenza B virus 132 His Phe Ala Asn Leu Lys Gly Thr Gln Thr Arg Gly Lys 1 5 10 133 12 PRT Influenza B virus 133 Lys Pro Arg Ser Ala Leu Lys Cys Lys Gly Phe His 1 5 10 134 22 PRT Influenza B virus MOD_RES (15) gly or ala 134 Lys Ser Lys Pro Tyr Tyr Thr Gly Glu His Ala Lys Ala Ile Xaa Asn 1 5 10 15 Cys Pro Ile Trp Val Lys 20 135 16 PRT Influenza virus MOD_RES (3) val or ile 135 His Pro Xaa Thr Ile Gly Glu Cys Pro Lys Tyr Val Xaa Xaa Xaa Lys 1 5 10 15 136 21 PRT Influenza virus MOD_RES (10) glu or gly 136 His Asp Ser Asn Val Lys Asn Leu Tyr Xaa Lys Val Xaa Xaa Gln Leu 1 5 10 15 Xaa Asn Asn Ala Lys 20 137 17 PRT Influenza virus MOD_RES (10) glu or gly 137 His Asp Ser Asn Val Lys Asn Leu Tyr Xaa Lys Val Xaa Xaa Gln Leu 1 5 10 15 Lys 138 36 PRT Influenza virus MOD_RES (4)..(5) asn or asp 138 His Lys Cys Xaa Xaa Xaa Cys Met Glu Ser Val Xaa Asn Gly Thr Tyr 1 5 10 15 Asp Tyr Pro Lys Tyr Ser Glu Glu Ser Lys Leu Asn Arg Glu Xaa Ile 20 25 30 Asp Gly Val Lys 35 139 26 PRT Influenza virus MOD_RES (4)..(5) asn or asp 139 His Lys Cys Xaa Xaa Xaa Cys Met Glu Ser Val Xaa Asn Gly Thr Tyr 1 5 10 15 Asp Tyr Pro Lys Tyr Ser Glu Glu Ser Lys 20 25 140 50 PRT Influenza virus MOD_RES (4) glu or gly 140 His Gln Asn Xaa Gln Gly Ser Gly Tyr Ala Ala Asp Gln Lys Ser Thr 1 5 10 15 Gln Asn Ala Ile Xaa Gly Ile Thr Asn Lys Val Asn Ser Val Ile Glu 20 25 30 Lys Met Asn Thr Gln Phe Thr Ala Val Gly Lys Glu Phe Asn Lys Leu 35 40 45 Glu Lys 50 141 33 PRT Influenza virus MOD_RES (4) glu or gly 141 His Gln Asn Xaa Gln Gly Ser Gly Tyr Ala Ala Asp Gln Lys Ser Thr 1 5 10 15 Gln Asn Ala Ile Xaa Gly Ile Thr Asn Lys Val Asn Ser Val Ile Glu 20 25 30 Lys 142 26 PRT Influenza virus MOD_RES (4) glu or gly 142 His Gln Asn Xaa Gln Gly Ser Gly Tyr Ala Ala Asp Gln Lys Ser Thr 1 5 10 15 Gln Asn Ala Ile Xaa Gly Ile Thr Asn Lys 20 25 143 14 PRT Influenza virus 143 Lys Phe Glu Ile Phe Pro Lys Thr Ser Ser Trp Pro Asn His 1 5 10 144 27 PRT Influenza virus MOD_RES (3) asn, ser or thr 144 Lys Gly Xaa Ser Tyr Pro Lys Leu Xaa Lys Ser Tyr Xaa Asn Asn Lys 1 5 10 15 Gly Lys Glu Val Leu Val Leu Trp Gly Val His 20 25 145 18 PRT Influenza virus MOD_RES (4) val or thr 145 Lys Ser Tyr Xaa Asn Asn Lys Gly Lys Glu Val Leu Val Leu Trp Gly 1 5 10 15 Val His 146 36 PRT Influenza virus 146 His Lys Cys Asn Asn Glu Cys Met Glu Ser Val Lys Asn Gly Thr Tyr 1 5 10 15 Asp Tyr Pro Lys Tyr Ser Glu Glu Ser Lys Leu Asn Arg Glu Lys Ile 20 25 30 Asp Gly Val Lys 35 147 26 PRT Influenza virus 147 His Lys Cys Asn Asn Glu Cys Met Glu Ser Val Lys Asn Gly Thr Tyr 1 5 10 15 Asp Tyr Pro Lys Tyr Ser Glu Glu Ser Lys 20 25 148 20 PRT Influenza virus 148 His Lys Cys Asn Asn Glu Cys Met Glu Ser Val Lys Asn Gly Thr Tyr 1 5 10 15 Asp Tyr Pro Lys 20 149 12 PRT Influenza virus 149 His Lys Cys Asn Asn Glu Cys Met Glu Ser Val Lys 1 5 10 150 34 PRT Influenza virus MOD_RES (9) lys or arg 150 His Asn Gly Lys Ser Ser Phe Tyr Xaa Asn Leu Leu Trp Leu Thr Xaa 1 5 10 15 Lys Asn Gly Leu Tyr Pro Asn Leu Ser Lys Ser Tyr Val Asn Asn Lys 20 25 30 Glu Lys 151 32 PRT Influenza virus MOD_RES (9) lys or arg 151 His Asn Gly Lys Ser Ser Phe Tyr Xaa Asn Leu Leu Trp Leu Thr Xaa 1 5 10 15 Lys Asn Gly Leu Tyr Pro Asn Leu Ser Lys Ser Tyr Val Asn Asn Lys 20 25 30 152 26 PRT Influenza virus MOD_RES (9) lys or arg 152 His Asn Gly Lys Ser Ser Phe Tyr Xaa Asn Leu Leu Trp Leu Thr Xaa 1 5 10 15 Lys Asn Gly Leu Tyr Pro Asn Leu Ser Lys 20 25 153 17 PRT Influenza virus MOD_RES (9) lys or arg 153 His Asn Gly Lys Ser Ser Phe Tyr Xaa Asn Leu Leu Trp Leu Thr Xaa 1 5 10 15 Lys 154 40 PRT Influenza virus 154 Lys Ser Ser Phe Tyr Lys Asn Leu Leu Trp Leu Thr Glu Lys Asn Gly 1 5 10 15 Leu Tyr Pro Asn Leu Ser Lys Ser Tyr Val Asn Asn Lys Glu Lys Glu 20 25 30 Val Leu Val Leu Trp Gly Val His 35 40 155 35 PRT Influenza virus 155 Lys Asn Leu Leu Trp Leu Thr Glu Lys Asn Gly Leu Tyr Pro Asn Leu 1 5 10 15 Ser Lys Ser Tyr Val Asn Asn Lys Glu Lys Glu Val Leu Val Leu Trp 20 25 30 Gly Val His 35 156 27 PRT Influenza virus 156 Lys Asn Gly Leu Tyr Pro Asn Leu Ser Lys Ser Tyr Val Asn Asn Lys 1 5 10 15 Glu Lys Glu Val Leu Val Leu Trp Gly Val His 20 25 157 18 PRT Influenza virus MOD_RES (4) val or ala 157 Lys Ser Tyr Xaa Asn Asn Lys Glu Lys Glu Val Xaa Xaa Leu Trp Gly 1 5 10 15 Val His 158 12 PRT Influenza virus 158 Lys Glu Ser Ser Trp Pro Asn His Thr Val Thr Lys 1 5 10 159 44 PRT Influenza virus MOD_RES (4) thr or asn 159 His Glu Thr Xaa Lys Gly Val Thr Ala Ala Cys Pro Tyr Ala Gly Ala 1 5 10 15 Ser Ser Phe Tyr Arg Asn Leu Leu Trp Leu Val Lys Lys Glu Asn Ser 20 25 30 Tyr Pro Lys Leu Ser Lys Ser Tyr Val Asn Asn Lys 35 40 160 38 PRT Influenza virus MOD_RES (4) thr or asn 160 His Glu Thr Xaa Lys Gly Val Thr Ala Ala Cys Pro Tyr Ala Gly Ala 1 5 10 15 Ser Ser Phe Tyr Arg Asn Leu Leu Trp Leu Val Lys Lys Glu Asn Ser 20 25 30 Tyr Pro Lys Leu Ser Lys 35 161 22 PRT Influenza virus 161 Lys Phe Glu Ile Phe Pro Lys Thr Ser Ser Trp Pro Asn Glu Val Leu 1 5 10 15 Val Leu Trp Gly Val His 20 162 8 PRT Influenza virus 162 Lys Glu Arg Ser Trp Pro Lys His 1 5 163 21 PRT Influenza virus 163 Lys Leu Ser Lys Ser Tyr Val Asn Asn Lys Glu Lys Glu Val Leu Val 1 5 10 15 Leu Trp Gln Val His 20 164 15 PRT Influenza virus 164 Lys Asn Asn Lys Glu Lys Glu Val Leu Val Leu Trp Gln Val His 1 5 10 15 165 34 PRT Influenza virus MOD_RES (2) lys or asn 165 His Xaa Xaa Lys Ser Ser Phe Tyr Xaa Asn Leu Leu Trp Leu Thr Glu 1 5 10 15 Lys Asn Gly Xaa Tyr Pro Xaa Leu Ser Lys Ser Tyr Ala Asn Asn Lys 20 25 30 Glu Lys 166 17 PRT Influenza virus MOD_RES (2) lys or asn 166 His Xaa Xaa Lys Ser Ser Phe Tyr Xaa Asn Leu Leu Trp Leu Thr Glu 1 5 10 15 Lys 167 9 PRT Influenza virus 167 His Ala Lys Lys Ser Ser Phe Tyr Lys 1 5 168 11 PRT Influenza virus 168 His Asn Gly Lys Leu Cys Arg Leu Lys Gly Lys 1 5 10 169 9 PRT Influenza virus MOD_RES (7) gln or gly 169 His Tyr Lys Leu Asn Asn Xaa Lys Lys 1 5 170 25 PRT Influenza virus 170 His Asp Ile Tyr Arg Asp Glu Ala Ile Asn Asn Arg Phe Gln Ile Gln 1 5 10 15 Gly Val Lys Leu Thr Gln Gly Tyr Lys 20 25 171 11 PRT Influenza virus 171 Lys Gly Asn Gly Cys Phe Glu Ile Phe His Lys 1 5 10 172 18 PRT Influenza virus 172 Lys Leu Asn Arg Leu Ile Glu Lys Thr Asn Asp Lys Tyr His Gln Ile 1 5 10 15 Glu Lys 173 14 PRT Influenza virus 173 Lys Leu Asn Arg Leu Ile Glu Lys Thr Asn Asp Lys Tyr His 1 5 10 174 13 PRT Influenza virus 174 Lys Cys His Thr Asp Lys Gly Ser Leu Ser Thr Thr Lys 1 5 10 175 16 PRT Influenza virus 175 Lys Ile Asn Asn Gly Asp Tyr Ala Lys Leu Tyr Ile Trp Gly Val His 1 5 10 15 176 17 PRT Influenza virus 176 His Asn Gly Lys Leu Cys Arg Lys Gly Ile Ala Pro Leu Gln Leu Gly 1 5 10 15 Lys 177 38 PRT Influenza virus 177 His Glu Thr Asn Arg Gln Val Thr Ala Ala Cys Pro Tyr Ala Gly Ala 1 5 10 15 Asn Ser Phe Phe Arg Asn Leu Ile Trp Leu Val Lys Lys Glu Ser Ser 20 25 30 Tyr Pro Lys Leu Ser Lys 35 178 35 PRT Influenza virus 178 His Glu Thr Asn Arg Gln Val Thr Ala Ala Cys Pro Tyr Ala Gly Ala 1 5 10 15 Asn Ser Phe Phe Arg Asn Leu Ile Trp Leu Val Lys Lys Glu Ser Ser 20 25 30 Tyr Pro Lys 35 179 31 PRT Influenza virus 179 His Pro Pro Thr Ser Thr Asp Gln Gln Ser Leu Tyr Gln Asn Ala Asp 1 5 10 15 Ala Tyr Ile Phe Val Gly Ser Ser Lys Tyr Asn Arg Lys Phe Lys 20 25 30 180 35 PRT Influenza virus 180 His Pro Pro Thr Ser Thr Asp Gln Gln Ser Leu Tyr Gln Asn Ala Asp 1 5 10 15 Ala Tyr Ile Phe Val Gly Ser Ser Lys Tyr Asn Arg Lys Phe Lys Pro 20 25 30 Glu Ile Ala 35 181 25 PRT Influenza virus 181 His Asp Ile Tyr Arg Asp Glu Ala Ile Asn Asn Arg Phe Gln Ile Gln 1 5 10 15 Gly Val Lys Ile Thr Gln Gly Tyr Lys 20 25 182 43 PRT Influenza virus 182 His Gln Asn Glu Gln Gly Ser Gly Tyr Ala Ala Asp Gln Lys Ser Thr 1 5 10 15 Gln Asn Ala Ile Asp Gly Ile Thr Asn Lys Val Asn Ser Val Ile Glu 20 25 30 Lys Met Asn Thr Gln Phe Thr Ala Val Gly Lys 35 40 183 33 PRT Influenza virus 183 His Gln Asn Glu Gln Gly Ser Gly Tyr Ala Ala Asp Gln Lys Ser Thr 1 5 10 15 Gln Asn Ala Ile Asp Gly Ile Thr Asn Lys Val Asn Ser Val Ile Glu 20 25 30 Lys 184 50 PRT Influenza virus 184 His Gln Asn Glu Gln Gly Ser Gly Tyr Ala Ala Asp Gln Lys Ser Thr 1 5 10 15 Gln Asn Ala Ile Asn Gly Ile Thr Asn Lys Val Asn Ser Val Ile Glu 20 25 30 Lys Met Asn Thr Gln Phe Thr Ala Val Gly Lys Glu Phe Asn Lys Leu 35 40 45 Glu Lys 50 185 18 PRT Influenza virus 185 His Asn Gly Lys Leu Cys Arg Leu Lys Gly Ile Ala Pro Leu Gln Leu 1 5 10 15 Gly Lys 186 12 PRT Influenza virus 186 His Lys Cys Asn Asn Glu Cys Met Glu Ser Val Lys 1 5 10 187 14 PRT Influenza virus 187 Lys Phe Glu Ile Phe Pro Lys Ala Ser Ser Trp Pro Asn His 1 5 10 188 21 PRT Influenza virus 188 His Asp Ser Asn Val Lys Asn Leu Tyr Glu Lys Val Arg Ser Gln Leu 1 5 10 15 Arg Asn Asn Ala Lys 20 189 22 PRT Influenza virus 189 Lys Val Asn Ser Val Ile Lys Lys Met Asn Thr Gln Phe Ala Ala Val 1 5 10 15 Gly Lys Glu Phe Asn His 20 190 8 PRT Influenza virus 190 Lys His Asn Gly Lys Leu Cys Lys 1 5 191 28 PRT Influenza virus 191 Lys Lys Gly Thr Ser Tyr Pro Lys Leu Ser Lys Ser Tyr Thr His Asn 1 5 10 15 Lys Gly Lys Glu Val Leu Val Leu Trp Gly Val His 20 25 192 27 PRT Influenza virus 192 Lys Gly Thr Ser Tyr Pro Lys Leu Ser Lys Ser Tyr Thr His Asn Lys 1 5 10 15 Gly Lys Glu Val Leu Val Leu Trp Gly Val His 20 25 193 21 PRT Influenza virus 193 Lys Leu Ser Lys Ser Tyr Thr His Asn Lys Gly Lys Glu Val Leu Val 1 5 10 15 Leu Trp Gly Val His 20 194 18 PRT Influenza virus 194 Lys Ser Tyr Thr His Asn Lys Gly Lys Glu Val Leu Val Leu Trp Gly 1 5 10 15 Val His 195 10 PRT Influenza virus 195 Lys Gly Val Thr Ala Ser Cys Ser His Lys 1 5 10 196 34 PRT Influenza virus 196 Lys Gly Val Thr Ala Ser Cys Ser His Lys Gly Arg Ser Ser Phe Tyr 1 5 10 15 Arg Asn Leu Leu Trp Leu Thr Glu Lys Asn Gly Leu Tyr Pro Asn Leu 20 25 30 Ser Lys 197 27 PRT Influenza virus 197 Lys Gly Asn Ser Tyr Pro Lys Leu Ser Lys Ser Tyr Val Asn Asn Lys 1 5 10 15 Glu Lys Glu Val Leu Val Leu Trp Gly Ile His 20 25 198 8 PRT Influenza virus 198 Lys Glu Phe Asn His Leu Glu Lys 1 5 199 39 PRT Influenza virus 199 His Pro Pro Thr Ser Thr Asp Gln Gln Ser Leu Tyr Gln Asn Ala Asp 1 5 10 15 Ala Tyr Val Phe Val Gly Ser Ser Lys Tyr Asn Lys Lys Phe Lys Pro 20 25 30 Glu Ile Ala Thr Arg Pro Lys 35 200 31 PRT Influenza virus 200 His Pro Pro Thr Ser Thr Asp Gln Gln Ser Leu Tyr Gln Asn Ala Asp 1 5 10 15 Ala Tyr Val Phe Val Gly Ser Ser Lys Tyr Asn Lys Lys Phe Lys 20 25 30 201 31 PRT Influenza virus 201 His Glu Gly Lys Ser Ser Phe Tyr Arg Asn Leu Leu Trp Leu Thr Glu 1 5 10 15 Lys Glu Gly Ser Tyr Pro Lys Leu Lys Asn Ser Tyr Val Asn Lys 20 25 30 202 23 PRT Influenza virus 202 His Glu Gly Lys Ser Ser Phe Tyr Arg Asn Leu Leu Trp Leu Thr Glu 1 5 10 15 Lys Glu Gly Ser Tyr Pro Lys 20 203 26 PRT Influenza virus 203 His Lys Cys Asp Asn Glu Cys Met Glu Ser Val Arg Asn Gly Thr Tyr 1 5 10 15 Asp Tyr Pro Lys Tyr Ser Glu Glu Ser Lys 20 25 204 12 PRT Influenza virus 204 Lys Glu Ser Ser Trp Pro Asn His Thr Val Thr Lys 1 5 10 205 35 PRT Influenza virus 205 Lys Asn Leu Leu Trp Leu Thr Glu Lys Asn Gly Leu Tyr Pro Asn Leu 1 5 10 15 Ser Lys Ser Tyr Val Asn Asn Lys Glu Lys Glu Ile Leu Val Leu Trp 20 25 30 Gly Val His 35 206 27 PRT Influenza virus MOD_RES (9) lys or met 206 His Asn Gly Lys Ser Ser Phe Tyr Xaa Xaa Leu Leu Trp Leu Thr Xaa 1 5 10 15 Xaa Lys Asn Gly Leu Tyr Pro Asn Leu Ser Lys 20 25 207 17 PRT Influenza virus 207 His Asn Gly Lys Ser Ser Phe Tyr Lys Asn Leu Leu Trp Leu Thr Glu 1 5 10 15 Lys 208 55 PRT Influenza virus 208 His Thr Val Thr Lys Gly Val Thr Ala Ser Cys Ser His Asn Gly Lys 1 5 10 15 Ser Ser Phe Tyr Lys Asn Leu Leu Trp Leu Thr Glu Lys Asn Gly Leu 20 25 30 Tyr Pro Asn Leu Ser Lys Ser Tyr Val Asn Asn Lys Glu Lys Glu Val 35 40 45 Leu Val Leu Trp Gly Val His 50 55 209 38 PRT Influenza virus MOD_RES (5) lys or gly 209 His Thr Val Thr Xaa Gly Val Xaa Ala Ser Cys Ser His Asn Gly Lys 1 5 10 15 Ser Ser Phe Tyr Xaa Xaa Leu Leu Trp Leu Thr Xaa Lys Xaa Gly Leu 20 25 30 Tyr Pro Asn Leu Ser Lys 35 210 29 PRT Influenza virus 210 His Thr Val Thr Lys Gly Val Thr Ala Ser Cys Ser His Asn Gly Lys 1 5 10 15 Ser Ser Phe Tyr Lys Asn Leu Leu Trp Leu Thr Glu Lys 20 25 211 48 PRT Influenza virus 211 Lys Tyr Val Arg Ser Thr Lys Leu Arg Met Val Thr Gly Leu Arg Asn 1 5 10 15 Ile Pro Ser Ile Gln Ser Arg Gly Leu Phe Gly Ala Ile Ala Gly Phe 20 25 30 Ile Glu Gly Gly Trp Thr Gly Met Ile Asp Gly Trp Tyr Gly Tyr His 35 40 45 212 43 PRT Influenza virus 212 His Gln Asn Glu Gln Gly Ser Gly Tyr Ala Ala Asp Gln Lys Ser Thr 1 5 10 15 Gln Asn Ala Ile Asn Gly Ile Thr Asn Lys Val Asn Ser Ile Ile Glu 20 25 30 Lys Met Asn Thr Gln Phe Thr Ala Val Gly Lys 35 40 213 33 PRT Influenza virus 213 His Gln Asn Glu Gln Gly Ser Gly Tyr Ala Ala Asp Gln Lys Ser Thr 1 5 10 15 Gln Asn Ala Ile Asn Gly Ile Thr Asn Lys Val Asn Ser Ile Ile Glu 20 25 30 Lys 214 26 PRT Influenza virus 214 His Gln Asn Glu Gln Gly Ser Gly Tyr Ala Ala Asp Gln Lys Ser Thr 1 5 10 15 Gln Asn Ala Ile Asn Gly Ile Thr Asn Lys 20 25 215 23 PRT Influenza virus 215 His Ser Gly Ala Arg Ser Phe Tyr Arg Asn Leu Leu Trp Ile Val Lys 1 5 10 15 Lys Gly Asn Ser Tyr Pro Lys 20 216 26 PRT Influenza virus 216 His Ser Gly Ala Arg Ser Phe Tyr Arg Asn Leu Leu Trp Ile Val Lys 1 5 10 15 Lys Gly Asn Ser Tyr Pro Lys Leu Asn Lys 20 25 217 32 PRT Influenza virus 217 His Ser Gly Ala Arg Ser Phe Tyr Arg Asn Leu Leu Trp Ile Val Lys 1 5 10 15 Lys Gly Asn Ser Tyr Pro Lys Leu Asn Lys Ser Tyr Thr Asn Asp Lys 20 25 30 218 34 PRT Influenza virus 218 His Ser Gly Ala Arg Ser Phe Tyr Arg Asn Leu Leu Trp Ile Val Lys 1 5 10 15 Lys Gly Asn Ser Tyr Pro Lys Leu Asn Lys Ser Tyr Thr Asn Asp Lys 20 25 30 Gly Lys 219 16 PRT Influenza virus 219 His Thr Val Ser Lys Gly Val Thr Thr Ser Cys Ser His Asn Gly Lys 1 5 10 15 220 12 PRT Influenza virus 220 Lys Ala Thr Ser Trp Pro Asn His Glu Thr Thr Lys 1 5 10 221 12 PRT Influenza virus 221 Lys Gln Val Thr Thr Ser Cys Ser His Asn Gln Lys 1 5 10 222 27 PRT Influenza virus 222 Lys Gly Asn Ser Tyr Pro Lys Leu Asn Lys Ser Tyr Thr Asn Asp Lys 1 5 10 15 Gly Lys Glu Val Leu Val Ile Trp Gly Val His 20 25 223 21 PRT Influenza virus 223 Lys Leu Asn Lys Ser Tyr Thr Asn Asp Lys Gly Lys Glu Val Leu Val 1 5 10 15 Ile Trp Gly Val His 20 224 18 PRT Influenza virus 224 Lys Ser Tyr Thr Asn Asp Lys Gly Lys Glu Val Leu Val Ile Trp Gly 1 5 10 15 Val His 225 35 PRT Influenza virus MOD_RES (16) glu or gln 225 His Asn Gln Lys Ser Ser Phe Tyr Arg Asn Leu Leu Trp Leu Thr Xaa 1 5 10 15 Lys Asn Gly Leu Tyr Pro Asn Leu Ser Lys Ser Tyr Xaa Ala Asn Asn 20 25 30 Lys Glu Lys 35 226 16 PRT Influenza virus 226 His Pro Ile Thr Ile Gly Glu Cys Pro Lys Tyr Val Arg Ser Ala Lys 1 5 10 15 227 43 PRT Influenza virus 227 His Gln Asn Glu Gln Gly Ser Gly Tyr Ala Ala Asp Gln Lys Ser Thr 1 5 10 15 Gln Asn Ala Ile Asn Gly Ile Thr Asn Lys Val Asn Ser Val Ile Glu 20 25 30 Lys Met Asn Thr Gln Phe Thr Ala Val Gly Lys 35 40 228 33 PRT Influenza virus 228 His Gln Asn Glu Gln Gly Ser Gly Tyr Ala Ala Asp Gln Lys Ser Thr 1 5 10 15 Gln Asn Ala Ile Asn Gly Ile Thr Asn Lys Val Asn Ser Val Ile Glu 20 25 30 Lys 229 34 PRT Influenza virus 229 His Asn Gly Lys Ser Ser Phe Tyr Arg Asn Leu Leu Trp Leu Thr Glu 1 5 10 15 Lys Asn Gly Leu Tyr Pro Asn Leu Ser Lys Ser Tyr Val Asn Asn Lys 20 25 30 Glu Lys 230 11 PRT Influenza virus 230 Lys His Phe Glu Lys Val Lys Ile Leu Pro Lys 1 5 10 231 14 PRT Influenza virus 231 Lys His Leu Leu Ser Ser Val Lys His Phe Glu Lys Val Lys 1 5 10 232 13 PRT Influenza virus MOD_RES (3) lys, gln or met 232 His Ala Xaa Xaa Ile Leu Glu Lys Thr His Asn Gly Lys 1 5 10 233 16 PRT Influenza virus MOD_RES (3) lys, gln or met 233 His Ala Xaa Xaa Ile Leu Glu Lys Thr His Asn Gly Lys Leu Cys Xaa 1 5 10 15 234 19 PRT Influenza virus 234 His Asn Val His Pro Leu Thr Ile Gly Glu Cys Pro Lys Tyr Val Lys 1 5 10 15 Ser Glu Lys 235 16 PRT Influenza virus 235 His Pro Leu Thr Ile Gly Glu Cys Pro Lys Tyr Val Lys Ser Glu Lys 1 5 10 15 236 18 PRT Influenza virus 236 Lys His Leu Leu Ser Ser Val Lys His Phe Glu Lys Val Lys Ile Leu 1 5 10 15 Pro Lys 237 38 PRT Influenza virus 237 Lys Arg Gln Ser Ser Gly Ile Met Lys Thr Glu Gly Thr Leu Glu Asn 1 5 10 15 Cys Glu Thr Lys Cys Gln Thr Pro Leu Gly Ala Ile Asn Thr Thr Leu 20 25 30 Pro Phe His Asn Val His 35 238 27 PRT Influenza virus MOD_RES (7) val or ile 238 Lys Gly Ser Asn Tyr Pro Xaa Ala Lys Xaa Ser Tyr Asn Asn Thr Ser 1 5 10 15 Gly Glu Gln Met Leu Ile Ile Trp Gln Xaa His 20 25 239 36 PRT Influenza virus 239 His Thr Thr Leu Gly Gln Ser Arg Ala Cys Ala Val Ser Gly Asn Pro 1 5 10 15 Ser Phe Phe Arg Asn Met Val Trp Leu Thr Glu Lys Gly Ser Asn Tyr 20 25 30 Pro Val Ala Lys 35 240 7 PRT Influenza virus 240 Lys His Phe Glu Lys Val Lys 1 5 241 38 PRT Influenza virus 241 Lys Ile Ser Lys Arg Gly Ser Ser Gly Ile Met Lys Thr Glu Gly Thr 1 5 10 15 Leu Glu Asn Cys Glu Thr Lys Cys Gln Thr Pro Leu Gly Ala Ile Asn 20 25 30 Thr Thr Leu Pro Phe His 35 242 35 PRT Influenza virus 242 Lys Arg Gly Ser Ser Gly Ile Met Lys Thr Glu Gly Thr Leu Glu Asn 1 5 10 15 Cys Glu Thr Lys Cys Gln Thr Pro Leu Gly Ala Ile Asn Thr Thr Leu 20 25 30 Pro Phe His 35 243 27 PRT Influenza virus 243 Lys Thr Glu Gly Thr Leu Glu Asn Cys Glu Thr Lys Cys Gln Thr Pro 1 5 10 15 Leu Gly Ala Ile Asn Thr Thr Leu Pro Phe His 20 25 244 38 PRT Influenza virus 244 Lys Ile Ser Lys Arg Gly Ser Ser Gly Ile Met Lys Thr Glu Gly Thr 1 5 10 15 Leu Glu Asn Cys Glu Thr Lys Cys Gln Thr Pro Leu Gly Ala Ile Asn 20 25 30 Thr Thr Leu Pro Phe His 35 245 30 PRT Influenza virus MOD_RES (29) val or ile 245 Lys Thr Glu Gly Thr Leu Glu Asn Cys Glu Thr Lys Cys Gln Thr Pro 1 5 10 15 Leu Gly Ala Ile Asn Thr Thr Leu Pro Phe His Asn Xaa His 20 25 30 246 38 PRT Influenza virus 246 Lys Ile Ser Lys Arg Gly Ser Ser Gly Ile Met Lys Thr Glu Gly Thr 1 5 10 15 Leu Glu Asn Cys Glu Thr Lys Cys Gln Thr Pro Leu Gly Ala Ile Asn 20 25 30 Thr Thr Leu Pro Phe His 35 247 27 PRT Influenza virus MOD_RES (2) glu or gly 247 Lys Xaa Ser Asn Tyr Pro Val Ala Lys Gly Ser Tyr Asn Asn Thr Ser 1 5 10 15 Gly Glu Gln Met Leu Ile Ile Trp Gly Val His 20 25 248 16 PRT Influenza virus 248 His Pro Leu Thr Ile Gly Glu Cys Pro Lys Tyr Val Lys Ser Glu Lys 1 5 10 15 249 16 PRT Influenza virus 249 Lys Cys Gln Thr Pro Leu Gly Ala Ile Lys Thr Thr Leu Pro Phe His 1 5 10 15 250 58 PRT Influenza virus MOD_RES (21) phe or ile 250 His His Ser Asn Asp Gln Gly Ser Gly Tyr Ala Ala Asp Lys Glu Ser 1 5 10 15 Thr Gln Lys Ala Xaa Asp Gly Ile Thr Asn Lys Val Asn Ser Val Ile 20 25 30 Glu Lys Met Asn Thr Gln Phe Glu Ala Val Gly Lys Leu Phe Xaa Asn 35 40 45 Leu Glu Lys Leu Glu Asn Leu Asn Lys Lys 50 55 251 57 PRT Influenza virus MOD_RES (20) phe or ile 251 His Ser Asn Asp Gln Gly Ser Gly Tyr Ala Ala Asp Lys Glu Ser Thr 1 5 10 15 Gln Lys Ala Xaa Asp Gly Ile Thr Asn Lys Val Asn Ser Val Ile Glu 20 25 30 Lys Met Asn Thr Gln Phe Glu Ala Val Gly Lys Leu Phe Xaa Asn Leu 35 40 45 Glu Lys Leu Glu Asn Leu Asn Lys Lys 50 55 252 26 PRT Influenza virus MOD_RES (20) phe or ile 252 His Ser Asn Asp Gln Gly Ser Gly Tyr Ala Ala Asp Lys Glu Ser Thr 1 5 10 15 Gln Lys Ala Xaa Asp Gly Ile Thr Asn Lys 20 25 253 21 PRT Influenza virus 253 His Asp Ser Asn Val Arg Asn Leu Tyr Asp Lys Val Arg Met Gln Leu 1 5 10 15 Arg Asp Asn Ala Lys 20 254 30 PRT Influenza virus 254 His Lys Cys Asp Asp Glu Cys Met Asn Ser Val Lys Asn Gly Thr Tyr 1 5 10 15 Asp Tyr Pro Lys Leu Asn Arg Asn Glu Ile Lys Gly Val Lys 20 25 30 255 27 PRT Influenza virus 255 His Lys Cys Asp Asp Glu Cys Met Asn Ser Val Lys Asn Gly Thr Tyr 1 5 10 15 Asp Tyr Pro Lys Leu Asn Arg Asn Glu Ile Lys 20 25 256 20 PRT Influenza virus 256 His Lys Cys Asp Asp Glu Cys Met Asn Ser Val Lys Asn Gly Thr Tyr 1 5 10 15 Asp Tyr Pro Lys 20 257 12 PRT Influenza virus 257 His Lys Cys Asp Asp Glu Cys Met Asn Ser Val Lys 1 5 10 258 27 PRT Influenza virus 258 Lys Gly Ser Asn Tyr Pro Val Ala Lys Gly Ser Tyr Asn Asn Thr Asn 1 5 10 15 Gly Glu Gln Ile Leu Ile Ile Trp Gly Val His 20 25 259 43 PRT Influenza virus 259 His Ser Asn Asp Gln Gly Ser Gly Tyr Ala Ala Asp Lys Glu Ser Thr 1 5 10 15 Gln Lys Ala Val Asp Gly Ile Thr Asn Lys Val Asn Ser Val Ile Glu 20 25 30 Lys Met Asn Thr Gln Phe Glu Ala Val Gly Lys 35 40 260 35 PRT Influenza virus 260 Lys Arg Gly Ser Ser Gly Ile Met Lys Thr Glu Gly Thr Leu Glu Asn 1 5 10 15 Cys Glu Thr Lys Cys Gln Thr Pro Leu Gly Ala Ile Asn Thr Thr Leu 20 25 30 Pro Phe His 35 261 16 PRT Influenza virus 261 His Pro Leu Thr Ile Gly Glu Cys Pro Lys Tyr Val Lys Ser Glu Lys 1 5 10 15 262 16 PRT Influenza virus 262 His Ala Lys Asp Ile Leu Glu Lys Thr His Asn Gly Lys Leu Cys Lys 1 5 10 15 263 25 PRT Influenza virus 263 His Asp Val Tyr Arg Asp Glu Ala Leu Asn Asn Arg Phe Gln Ile Lys 1 5 10 15 Gly Val Glu Leu Lys Ser Gly Tyr Lys 20 25 264 19 PRT Influenza virus 264 His Thr Ile Asp Leu Thr Asp Ser Glu Met Asn Lys Leu Phe Glu Arg 1 5 10 15 Thr Arg Lys 265 7 PRT Influenza virus 265 Lys Phe His Gln Ile Glu Lys 1 5 266 11 PRT Influenza virus MOD_RES (8) gly or gln 266 Lys Thr Asn Glu Lys Phe His Xaa Ile Glu Lys 1 5 10 267 14 PRT Influenza virus MOD_RES (5) val or leu 267 Lys Leu Asn Arg Xaa Ile Glu Lys Thr Asn Glu Lys Phe His 1 5 10 268 25 PRT Influenza virus 268 His Gln Ile Glu Lys Glu Phe Ser Glu Val Glu Gly Arg Ile Gln Asp 1 5 10 15 Leu Glu Lys Tyr Val Glu Asp Thr Lys 20 25 269 8 PRT Influenza virus 269 Lys Ile Cys Asn Asn Pro His Lys 1 5 270 14 PRT Influenza virus 270 Lys Leu Asn Arg Val Ile Lys Lys Thr Asn Glu Lys Phe His 1 5 10 271 24 PRT Influenza virus MOD_RES (3) ile or val 271 His Asp Xaa Tyr Arg Asp Glu Ala Leu Asn Asn Arg Phe Gln Ile Lys 1 5 10 15 Xaa Val Glu Xaa Ser Xaa Tyr Lys 20 272 25 PRT Influenza virus 272 His Gln Ile Glu Lys Glu Phe Ser Glu Val Glu Gly Arg Ile Gln Asp 1 5 10 15 Leu Glu Lys Tyr Val Glu Asp Thr Lys 20 25 273 25 PRT Influenza virus 273 Lys Tyr Val Glu Asp Thr Lys Ile Asp Leu Trp Ser Tyr Asn Ala Glu 1 5 10 15 Leu Leu Val Ala Leu Glu Asn Gln His 20 25 274 49 PRT Influenza virus 274 Lys Tyr Val Lys Gln Asn Ser Leu Lys Leu Ala Thr Gly Met Arg Asn 1 5 10 15 Val Pro Glu Lys Gln Thr Arg Gly Leu Phe Gly Ala Ile Ala Gly Phe 20 25 30 Ile Glu Asn Gly Trp Glu Gly Met Ile Asp Gly Trp Tyr Gly Phe Arg 35 40 45 His 275 39 PRT Influenza virus 275 Lys Glu Phe Ser Glu Val Glu Gly Arg Ile Gln Asp Leu Glu Lys Tyr 1 5 10 15 Val Glu Asp Thr Lys Ile Asp Leu Trp Ser Tyr Asn Ala Glu Leu Leu 20 25 30 Val Ala Leu Glu Asn Gln His 35 276 33 PRT Influenza virus MOD_RES (4) ser or glu 276 His Gln Asn Xaa Xaa Gly Xaa Gly Xaa Ala Ala Asp Xaa Lys Ser Thr 1 5 10 15 Gln Xaa Ala Xaa Asp Xaa Ile Xaa Xaa Lys Xaa Asn Xaa Val Ile Xaa 20 25 30 Lys 277 18 PRT Influenza virus MOD_RES (4) gly or gln 277 His Cys Asp Xaa Phe Xaa Asn Glu Lys Trp Asp Leu Phe Xaa Glu Arg 1 5 10 15 Xaa Lys 278 20 PRT Influenza virus 278 His Thr Ile Asp Leu Thr Asp Ser Glu Met Asn Lys Lys Leu Phe Glu 1 5 10 15 Arg Thr Arg Lys 20 279 28 PRT Influenza virus 279 Lys Ser Gly Ser Thr Tyr Pro Val Leu Lys Val Thr Met Pro Asn Asn 1 5 10 15 Asp Asn Phe Asp Lys Leu Tyr Ile Trp Gly Val His 20 25 280 34 PRT Influenza virus 280 Lys Leu Asn Trp Leu Thr Lys Ser Gly Asn Thr Tyr Pro Val Leu Asn 1 5 10 15 Val Thr Met Pro Asn Asn Asp Asn Phe Asp Lys Leu Val Ile Trp Gly 20 25 30 Val His 281 19 PRT Influenza virus 281 His Thr Ile Asp Leu Thr Asp Ser Glu Met Asn Lys Leu Phe Glu Lys 1 5 10 15 Thr Arg Lys 282 18 PRT Influenza virus 282 Lys Leu Asn Arg Leu Ile Glu Lys Thr Asn Glu Lys Phe His Gln Thr 1 5 10 15 Glu Lys 283 47 PRT Influenza virus 283 His Thr Gly Lys Ser Ser Val Met Arg Ser Asp Ala Pro Ile Asp Phe 1 5 10 15 Cys Asn Ser Glu Cys Ile Thr Pro Asn Gln Ser Ile Pro Asn Asp Lys 20 25 30 Pro Phe Gln Asn Val Asn Lys Ile Thr Tyr Gly Ala Cys Pro Lys 35 40 45 284 39 PRT Influenza virus 284 His Thr Gly Lys Ser Ser Val Met Arg Ser Asp Ala Pro Ile Asp Phe 1 5 10 15 Cys Asn Ser Glu Cys Ile Thr Pro Asn Gln Ser Ile Pro Asn Asp Lys 20 25 30 Pro Phe Gln Asn Val Asn Lys 35 285 33 PRT Influenza virus 285 His Pro Ser Thr Asp Ser Asp Gln Thr Ser Leu Tyr Val Arg Ala Ser 1 5 10 15 Gly Arg Val Thr Val Ser Thr Lys Arg Ser Gln Gln Thr Val Ile Pro 20 25 30 Lys 286 25 PRT Influenza virus 286 Lys Tyr Val Glu Asp Thr Lys Ile Asp Leu Trp Ser Tyr Asn Ala Glu 1 5 10 15 Leu Leu Val Ala Leu Glu Asn Gln His 20 25 287 26 PRT Influenza virus 287 Lys Leu Phe Glu Arg Thr Arg Lys Gln Leu Arg Glu Asn Ala Glu Asp 1 5 10 15 Met Gly Asn Gly Cys Phe Lys Ile Tyr His 20 25 288 16 PRT Influenza virus 288 Lys Arg Arg Ser Ile Lys Ser Phe Phe Ser Arg Leu Asn Trp Leu His 1 5 10 15 289 16 PRT Influenza virus MOD_RES (12) val or arg 289 His Pro Val Thr Ile Gly Glu Cys Pro Lys Tyr Xaa Lys Ser Thr Lys 1 5 10 15 290 30 PRT Influenza virus 290 Lys Gly Asn Ser Tyr Pro Lys Leu Ser Lys Leu Ser Lys Ser Tyr Ile 1 5 10 15 Ile Asn Lys Lys Lys Glu Val Leu Val Ile Trp Gly Ile His 20 25 30 291 24 PRT Influenza virus MOD_RES (9) val or tyr 291 Lys Leu Ser Lys Leu Ser Lys Ser Xaa Ile Ile Asn Lys Lys Lys Glu 1 5 10 15 Val Leu Val Ile Trp Gly Ile His 20 292 21 PRT Influenza virus MOD_RES (6) val or tyr 292 Lys Leu Ser Lys Ser Xaa Ile Ile Asn Lys Lys Lys Glu Val Leu Val 1 5 10 15 Ile Trp Gly Ile His 20 293 46 PRT Plasmodium falciparum 293 Lys Glu Glu Glu Glu Lys Glu Lys Glu Lys Glu Lys Glu Lys Glu Glu 1 5 10 15 Lys Glu Lys Glu Glu Lys Glu Lys Glu Glu Lys Glu Lys Glu Lys Glu 20 25 30 Glu Lys Glu Lys Glu Lys Glu Glu Lys Glu Glu Glu Lys Lys 35 40 45 294 48 PRT Plasmodium falciparum 294 Lys Glu Glu Glu Glu Lys Glu Lys Glu Lys Glu Lys Glu Lys Glu Glu 1 5 10 15 Lys Glu Lys Glu Glu Lys Glu Lys Glu Glu Lys Glu Lys Glu Lys Glu 20 25 30 Glu Lys Glu Lys Glu Lys Glu Glu Lys Glu Glu Glu Lys Lys Glu Lys 35 40 45 295 47 PRT Plasmodium falciparum 295 Lys Glu Glu Glu Glu Lys Glu Lys Glu Lys Glu Lys Glu Lys Glu Glu 1 5 10 15 Lys Glu Lys Glu Glu Lys Glu Lys Glu Lys Glu Glu Lys Glu Lys Glu 20 25 30 Glu Lys Glu Lys Glu Glu Lys Glu Glu Lys Glu Glu Glu Lys Lys 35 40 45 296 10 PRT Plasmodium falciparum 296 Lys Glu Glu Glu Glu Lys Glu Lys Glu Lys 1 5 10 297 19 PRT Plasmodium falciparum 297 His Lys Lys Leu Ile Lys Ala Leu Lys Lys Asn Ile Glu Ser Ile Gln 1 5 10 15 Asn Lys Lys 298 19 PRT Plasmodium falciparum 298 His Lys Lys Leu Ile Lys Ala Leu Lys Lys Asn Ile Glu Ser Ile Gln 1 5 10 15 Asn Lys Met 299 10 PRT Plasmodium falciparum 299 His Lys Lys Leu Ile Lys Ala Leu Lys Lys 1 5 10 300 9 PRT Plasmodium falciparum 300 His Lys Lys Leu Ile Lys Ala Leu Lys 1 5 301 23 PRT Plasmodium falciparum 301 Lys Ala Thr Tyr Ser Phe Val Asn Thr Lys Lys Lys Ile Ile Ser Leu 1 5 10 15 Lys Ser Gln Gly His Lys Lys 20 302 22 PRT Plasmodium falciparum 302 Lys Ala Thr Tyr Ser Phe Val Asn Thr Lys Lys Lys Ile Ile Ser Leu 1 5 10 15 Lys Ser Gln Gly His Lys 20 303 21 PRT Plasmodium falciparum 303 Lys Ala Thr Tyr Ser Phe Val Asn Thr Lys Lys Lys Ile Ile Ser Leu 1 5 10 15 Lys Ser Gln Gly His 20 304 29 PRT Plasmodium falciparum 304 His Thr Tyr Val Lys Gly Lys Lys Ala Pro Ser Asp Pro Gln Cys Ala 1 5 10 15 Asp Ile Lys Glu Glu Cys Lys Glu Leu Leu Lys Glu Lys 20 25 305 11 PRT Plasmodium falciparum 305 Lys Ile Ile Ser Leu Lys Ser Gln Gly His Lys 1 5 10 306 21 PRT Plasmodium falciparum 306 Lys Lys Lys Lys Phe Glu Pro Leu Lys Asn Gly Asn Val Ser Glu Thr 1 5 10 15 Ile Lys Leu Ile His 20 307 20 PRT Plasmodium falciparum 307 Lys Lys Lys Phe Glu Pro Leu Lys Asn Gly Asn Val Ser Glu Thr Ile 1 5 10 15 Lys Leu Ile His 20 308 19 PRT Plasmodium falciparum 308 Lys Lys Phe Glu Pro Leu Lys Asn Gly Asn Val Ser Glu Thr Ile Lys 1 5 10 15 Leu Ile His 309 13 PRT Plasmodium falciparum 309 Lys Asn Gly Asn Val Ser Glu Thr Ile Lys Leu Ile His 1 5 10 310 11 PRT Plasmodium falciparum 310 Lys Leu Ile His Leu Gly Asn Lys Asp Lys Lys 1 5 10 311 36 PRT Plasmodium falciparum 311 Lys Val Lys Lys Ile Gly Val Thr Leu Lys Lys Phe Glu Pro Leu Lys 1 5 10 15 Asn Gly Asn Val Ser Glu Thr Ile Lys Leu Ile His Leu Gly Asn Lys 20 25 30 Asp Lys Lys His 35 312 59 PRT Plasmodium falciparum 312 His Leu Ile Tyr Lys Asn Lys Ser Tyr Asn Pro Leu Leu Leu Ser Cys 1 5 10 15 Val Lys Lys Met Asn Met Leu Lys Glu Asn Val Asp Tyr Ile Gln Asn 20 25 30 Gln Asn Leu Phe Lys Glu Leu Met Asn Gln Lys Ala Thr Tyr Ser Phe 35 40 45 Val Asn Thr Lys Lys Lys Ile Ile Ser Leu Lys 50 55 313 52 PRT Plasmodium falciparum 313 His Leu Ile Tyr Lys Asn Lys Ser Tyr Asn Pro Leu Leu Leu Ser Cys 1 5 10 15 Val Lys Lys Met Asn Met Leu Lys Glu Asn Val Asp Tyr Ile Gln Asn 20 25 30 Gln Asn Leu Phe Lys Glu Leu Met Asn Gln Lys Ala Thr Tyr Ser Phe 35 40 45 Val Asn Thr Lys 50 314 43 PRT Plasmodium falciparum 314 His Leu Ile Tyr Lys Asn Lys Ser Tyr Asn Pro Leu Leu Leu Ser Cys 1 5 10 15 Val Lys Lys Met Asn Met Leu Lys Glu Asn Val Asp Tyr Ile Gln Asn 20 25 30 Gln Asn Leu Phe Lys Glu Leu Met Asn Gln Lys 35 40 315 38 PRT Plasmodium falciparum 315 His Leu Ile Tyr Lys Asn Lys Ser Tyr Asn Pro Leu Leu Leu Ser Cys 1 5 10 15 Val Lys Lys Met Asn Met Leu Lys Glu Asn Val Asp Tyr Ile Gln Lys 20 25 30 Asn Gln Asn Leu Phe Lys 35 316 24 PRT Plasmodium falciparum 316 His Leu Ile Tyr Lys Asn Lys Ser Tyr Asn Pro Leu Leu Leu Ser Cys 1 5 10 15 Val Lys Lys Met Asn Met Leu Lys 20 317 47 PRT Plasmodium falciparum 317 Lys Ser Ala Asn Asn Ser Ala Asn Asn Gly Lys Lys Asn Asn Ala Glu 1 5 10 15 Glu Met Lys Asn Leu Val Asn Phe Leu Gln Ser His Lys Lys Leu Ile 20 25 30 Lys Ala Leu Lys Lys Asn Ile Glu Ser Ile Gln Asn Lys Lys His 35 40 45 318 37 PRT Plasmodium falciparum 318 Lys Lys Asn Asn Ala Glu Glu Met Lys Asn Leu Val Asn Phe Leu Gln 1 5 10 15 Ser His Lys Lys Leu Ile Lys Ala Leu Lys Lys Asn Ile Glu Ser Ile 20 25 30 Gln Asn Lys Lys His 35 319 29 PRT Plasmodium falciparum 319 Lys Asn Leu Val Asn Phe Leu Gln Ser His Lys Lys Leu Ile Lys Ala 1 5 10 15 Leu Lys Lys Asn Ile Glu Ser Ile Gln Asn Lys Lys His 20 25 320 19 PRT Plasmodium falciparum 320 Lys Lys Leu Ile Lys Ala Leu Lys Lys Asn Ile Glu Ser Ile Gln Asn 1 5 10 15 Lys Lys His 321 18 PRT Plasmodium falciparum 321 Lys Leu Ile Lys Ala Leu Lys Lys Asn Ile Glu Ser Ile Gln Asn Lys 1 5 10 15 Lys His 322 12 PRT Plasmodium falciparum 322 Lys Lys Asn Ile Glu Ser Ile Gln Asn Lys Lys His 1 5 10 323 11 PRT Plasmodium falciparum 323 Lys Asn Ile Glu Ser Ile Gln Asn Lys Lys His 1 5 10 324 17 PRT Plasmodium falciparum 324 Lys Asn Asn Ala Glu Glu Met Lys Asn Leu Val Asn Phe Leu Gln Ser 1 5 10 15 His 325 23 PRT Plasmodium falciparum 325 Lys Lys Leu Ile Lys Ala Leu Lys Lys Asn Ile Glu Ser Ile Gln Asn 1 5 10 15 Lys Lys Gln Gly His Lys Lys 20 326 19 PRT Plasmodium falciparum 326 Lys Lys Asn Asn Ala Glu Glu Met Lys Asn Leu Val Asn Phe Leu Gln 1 5 10 15 Ser His Lys 327 17 PRT Plasmodium falciparum 327 Lys Asn Asn Ala Glu Glu Met Lys Asn Leu Val Asn Phe Leu Gln Ser 1 5 10 15 His 328 22 PRT Plasmodium falciparum 328 Lys Leu Ile Lys Ala Leu Lys Lys Asn Ile Glu Ser Ile Gln Asn Lys 1 5 10 15 Lys Gln Gly His Lys Lys 20 329 28 PRT Plasmodium falciparum 329 Lys Val Lys Lys Ile Gly Val Thr Leu Lys Lys Phe Glu Pro Leu Lys 1 5 10 15 Asn Gly Asn Val Ser Glu Thr Ile Lys Leu Ile His 20 25 330 13 PRT Plasmodium falciparum 330 Lys Asn Gly Asn Val Ser Glu Thr Ile Lys Leu Ile His 1 5 10 331 11 PRT Plasmodium falciparum 331 Lys Leu Ile His Leu Gly Asn Lys Asp Lys Lys 1 5 10 332 28 PRT Plasmodium falciparum 332 Lys Ser Ala Asn Asn Ser Ala Asn Asn Gly Lys Lys Asn Asn Ala Glu 1 5 10 15 Glu Met Lys Asn Leu Val Asn Phe Leu Gln Ser His 20 25 333 18 PRT Plasmodium falciparum 333 Lys Lys Asn Asn Ala Glu Glu Met Lys Asn Leu Val Asn Phe Leu Gln 1 5 10 15 Ser His 334 19 PRT Plasmodium falciparum 334 Lys Lys Leu Ile Lys Ala Leu Lys Lys Asn Ile Glu Ser Ile Gln Asn 1 5 10 15 Lys Lys His 335 15 PRT Plasmodium falciparum 335 Lys Ala Leu Lys Lys Asn Ile Glu Ser Ile Gln Asn Lys Lys His 1 5 10 15 336 12 PRT Plasmodium falciparum 336 Lys Lys Asn Ile Glu Ser Ile Gln Asn Lys Lys His 1 5 10 337 27 PRT Plasmodium falciparum 337 Lys Glu Leu Met Asn Gln Lys Ala Thr Tyr Ser Phe Val Asn Thr Lys 1 5 10 15 Lys Lys Ile Ile Ser Leu Lys Ser Gln Gly His 20 25 338 7 PRT Plasmodium falciparum 338 Lys Ser Gln Gly His Lys Lys 1 5 339 12 PRT Plasmodium falciparum 339 Lys Lys Lys Ile Ile Ser Leu Lys Ser Gln Gly His 1 5 10 340 11 PRT Plasmodium falciparum 340 Lys Lys Ile Ile Ser Leu Lys Ser Gln Gly His 1 5 10 341 12 PRT Plasmodium falciparum 341 Lys Lys Asn Ile Glu Ser Ile Gln Asn Lys Lys His 1 5 10 342 11 PRT Plasmodium falciparum 342 Lys Asn Ile Glu Ser Ile Gln Asn Lys Lys His 1 5 10 343 29 PRT Plasmodium falciparum 343 His Thr Tyr Val Lys Gly Lys Lys Ala Pro Ser Asp Pro Gln Cys Ala 1 5 10 15 Asp Ile Lys Glu Glu Cys Lys Glu Leu Leu Lys Glu Lys 20 25 344 27 PRT Plasmodium falciparum 344 His Thr Tyr Val Lys Gly Lys Lys Ala Pro Ser Asp Pro Gln Cys Ala 1 5 10 15 Asp Ile Lys Glu Glu Cys Lys Glu Leu Leu Lys 20 25 345 29 PRT Plasmodium falciparum 345 His Glu Asn Val Leu Ser Ala Ala Leu Glu Asn Thr Gln Ser Glu Glu 1 5 10 15 Glu Lys Lys Glu Val Ile Asp Val Ile Glu Glu Val Lys 20 25 346 48 PRT Plasmodium falciparum 346 Lys Glu Asn Val Val Thr Thr Ile Leu Glu Lys Val Glu Glu Thr Thr 1 5 10 15 Ala Glu Ser Val Thr Thr Phe Ser Asn Ile Leu Glu Glu Ile Gln Glu 20 25 30 Asn Thr Ile Thr Asn Asp Thr Ile Glu Glu Lys Leu Glu Glu Leu His 35 40 45 347 14 PRT Plasmodium falciparum 347 His Tyr Leu Gln Gln Met Lys Glu Lys Phe Ser Lys Glu Lys 1 5 10 348 42 PRT Plasmodium falciparum 348 His Tyr Leu Gln Gln Met Lys Glu Lys Phe Ser Lys Glu Lys Asn Asn 1 5 10 15 Asn Val Ile Glu Val Thr Asn Lys Ala Glu Lys Lys Gly Asn Val Gln 20 25 30 Val Thr Asn Lys Thr Glu Lys Thr Thr Lys 35 40 349 48 PRT Plasmodium falciparum 349 His Tyr Leu Gln Gln Met Lys Glu Lys Phe Ser Lys Glu Lys Asn Asn 1 5 10 15 Asn Val Ile Glu Val Thr Asn Lys Ala Glu Lys Lys Gly Asn Val Gln 20 25 30 Val Thr Asn Lys Thr Glu Lys Thr Thr Lys Val Asp Lys Asn Asn Lys 35 40 45 350 57 PRT Plasmodium falciparum 350 His Tyr Leu Gln Gln Met Lys Glu Lys Phe Ser Lys Glu Lys Asn Asn 1 5 10 15 Asn Val Ile Glu Val Thr Asn Lys Ala Glu Lys Lys Gly Asn Val Gln 20 25 30 Val Thr Asn Lys Thr Glu Lys Thr Thr Lys Val Asp Lys Asn Asn Lys 35 40 45 Val Pro Lys Lys Arg Arg Thr Gln Lys 50 55 351 59 PRT Plasmodium falciparum 351 His Tyr Leu Gln Gln Met Lys Glu Lys Phe Ser Lys Glu Lys Asn Asn 1 5 10 15 Asn Val Ile Glu Val Thr Asn Lys Ala Glu Lys Lys Gly Asn Val Gln 20 25 30 Val Thr Asn Lys Thr Glu Lys Thr Thr Lys Val Asp Lys Asn Asn Lys 35 40 45 Val Pro Lys Lys Arg Arg Thr Gln Lys Ser Lys 50 55 352 52 PRT Plasmodium falciparum 352 His Val Asp Glu Val Met Lys Tyr Val Gln Lys Ile Asp Lys Glu Val 1 5 10 15 Asp Lys Glu Val Ser Lys Ala Leu Glu Ser Lys Asn Asp Val Thr Asn 20 25 30 Val Leu Lys Gln Asn Gln Asp Phe Phe Ser Lys Val Lys Asn Phe Val 35 40 45 Lys Lys Tyr Lys 50 353 50 PRT Plasmodium falciparum 353 His Val Asp Glu Val Met Lys Tyr Val Gln Lys Ile Asp Lys Glu Val 1 5 10 15 Asp Lys Glu Val Ser Lys Ala Leu Glu Ser Lys Asn Asp Val Thr Asn 20 25 30 Val Leu Lys Gln Asn Gln Asp Phe Phe Ser Lys Val Lys Asn Phe Val 35 40 45 Lys Lys 50 354 43 PRT Plasmodium falciparum 354 His Val Asp Glu Val Met Lys Tyr Val Gln Lys Ile Asp Lys Glu Val 1 5 10 15 Asp Lys Glu Val Ser Lys Ala Leu Glu Ser Lys Asn Asp Val Thr Asn 20 25 30 Val Leu Lys Gln Asn Gln Asp Phe Phe Ser Lys 35 40 355 35 PRT Plasmodium falciparum 355 His Val Asp Glu Val Met Lys Tyr Val Gln Lys Ile Asp Lys Glu Val 1 5 10 15 Asp Lys Glu Val Ser Lys Ala Leu Glu Ser Lys Asn Asp Val Thr Asn 20 25 30 Val Leu Lys 35 356 27 PRT Plasmodium falciparum 356 His Val Asp Glu Val Met Lys Tyr Val Gln Lys Ile Asp Lys Glu Val 1 5 10 15 Asp Lys Glu Val Ser Lys Ala Leu Glu Ser Lys 20 25 357 22 PRT Plasmodium falciparum 357 His Val Asp Glu Val Met Lys Tyr Val Gln Lys Ile Asp Lys Glu Val 1 5 10 15 Asp Lys Glu Val Ser Lys 20 358 18 PRT Plasmodium falciparum 358 His Val Asp Glu Val Met Lys Tyr Val Gln Lys Ile Asp Lys Glu Val 1 5 10 15 Asp Lys 359 14 PRT Plasmodium falciparum 359 His Val Asp Glu Val Met Lys Tyr Val Gln Lys Ile Asp Lys 1 5 10 360 39 PRT Plasmodium falciparum 360 Lys Asp Glu Val Ile Asp Leu Ile Val Gln Lys Glu Lys Arg Ile Glu 1 5 10 15 Lys Val Lys Ala Lys Lys Lys Lys Leu Glu Lys Lys Val Glu Glu Gly 20 25 30 Val Ser Gly Leu Lys Lys His 35 361 23 PRT Plasmodium falciparum 361 Lys Val Lys Ala Lys Lys Lys Lys Leu Glu Lys Lys Val Glu Glu Gly 1 5 10 15 Val Ser Gly Leu Lys Lys His 20 362 21 PRT Plasmodium falciparum 362 Lys Ala Lys Lys Lys Lys Leu Glu Lys Lys Val Glu Glu Gly Val Ser 1 5 10 15 Gly Leu Lys Lys His 20 363 19 PRT Plasmodium falciparum 363 Lys Lys Lys Lys Leu Glu Lys Lys Val Glu Glu Gly Val Ser Gly Leu 1 5 10 15 Lys Lys His 364 18 PRT Plasmodium falciparum 364 Lys Lys Lys Leu Glu Lys Lys Val Glu Glu Gly Val Ser Gly Leu Lys 1 5 10 15 Lys His 365 17 PRT Plasmodium falciparum 365 Lys Lys Leu Glu Lys Lys Val Glu Glu Gly Val Ser Gly Leu Lys Lys 1 5 10 15 His 366 16 PRT Plasmodium falciparum 366 Lys Leu Glu Lys Lys Val Glu Glu Gly Val Ser Gly Leu Lys Lys His 1 5 10 15 367 13 PRT Plasmodium falciparum 367 Lys Lys Val Glu Glu Gly Val Ser Gly Leu Lys Lys His 1 5 10 368 12 PRT Plasmodium falciparum 368 Lys Val Glu Glu Gly Val Ser Gly Leu Lys Lys His 1 5 10 369 59 PRT Plasmodium falciparum 369 His Val Glu Gln Asn Val Tyr Val Asp Val Asp Val Pro Ala Met Lys 1 5 10 15 Asp Gln Phe Leu Gly Ile Leu Asn Glu Ala Gly Gly Leu Lys Glu Met 20 25 30 Phe Phe Asn Leu Glu Asp Val Phe Lys Ser Glu Ser Asp Val Ile Thr 35 40 45 Val Glu Glu Ile Lys Asp Glu Pro Val Gln Lys 50 55 370 53 PRT Plasmodium falciparum 370 His Ile Lys Gly Leu Glu Glu Asp Asp Leu Glu Glu Val Asp Asp Leu 1 5 10 15 Lys Gly Ser Ile Leu Asp Met Leu Lys Gly Asp Met Glu Leu Gly Asp 20 25 30 Met Asp Lys Glu Ser Leu Glu Asp Val Thr Thr Lys Leu Gly Glu Arg 35 40 45 Val Glu Ser Leu Lys 50 371 44 PRT Plasmodium falciparum 371 His Ile Lys Gly Leu Glu Glu Asp Asp Leu Glu Glu Val Asp Asp Leu 1 5 10 15 Lys Gly Ser Ile Leu Asp Met Leu Lys Gly Asp Met Glu Leu Gly Asp 20 25 30 Met Asp Lys Glu Ser Leu Glu Asp Val Thr Thr Lys 35 40 372 35 PRT Plasmodium falciparum 372 His Ile Lys Gly Leu Glu Glu Asp Asp Leu Glu Glu Val Asp Asp Leu 1 5 10 15 Lys Gly Ser Ile Leu Asp Met Leu Lys Gly Asp Met Glu Leu Gly Asp 20 25 30 Met Asp Lys 35 373 25 PRT Plasmodium falciparum 373 His Ile Lys Gly Leu Glu Glu Asp Asp Leu Glu Glu Val Asp Asp Leu 1 5 10 15 Lys Gly Ser Ile Leu Asp Met Leu Lys 20 25 374 31 PRT Plasmodium falciparum 374 His Ile Ile Ser Gly Asp Ala Asp Val Leu Ser Ser Ala Leu Gly Met 1 5 10 15 Asp Glu Glu Gln Met Lys Thr Arg Lys Lys Ala Gln Arg Pro Lys 20 25 30 375 23 PRT Plasmodium falciparum 375 His Asp Ile Thr Thr Thr Leu Asp Glu Val Val Glu Leu Lys Asp Val 1 5 10 15 Glu Glu Asp Lys Ile Glu Lys 20 376 10 PRT Plasmodium falciparum 376 Lys Lys Leu Glu Glu Val His Glu Leu Lys 1 5 10 377 9 PRT Plasmodium falciparum 377 Lys Leu Glu Glu Val His Glu Leu Lys 1 5 378 19 PRT Plasmodium falciparum 378 Lys Thr Ile Glu Thr Asp Ile Leu Glu Glu Lys Lys Lys Glu Ile Glu 1 5 10 15 Lys Asp His 379 11 PRT Plasmodium falciparum 379 Lys Lys Glu Ile Glu Lys Asp His Phe Glu Lys 1 5 10 380 6 PRT Plasmodium falciparum 380 Lys Asp His Phe Glu Lys 1 5 381 11 PRT Plasmodium falciparum 381 Lys Phe Glu Glu Glu Ala Glu Glu Ile Lys His 1 5 10 382 47 PRT Plasmodium falciparum 382 Lys Asp Gly Asp Thr Lys Cys Thr Leu Glu Cys Ala Gln Gly Lys Lys 1 5 10 15 Cys Ile Lys His Lys Ser Asp His Asn His Lys Ser Asp His Asn His 20 25 30 Lys Ser Asp Pro Asn His Lys Lys Lys Asn Asn Asn Asn Asn Lys 35 40 45 383 40 PRT Plasmodium falciparum 383 Lys Asp Gly Asp Thr Lys Cys Thr Leu Glu Cys Ala Gln Gly Lys Lys 1 5 10 15 Cys Ile Lys His Lys Ser Asp His Asn His Lys Ser Asp His Asn His 20 25 30 Lys Ser Asp Pro Asn His Lys Lys 35 40 384 39 PRT Plasmodium falciparum 384 Lys Asp Gly Asp Thr Lys Cys Thr Leu Glu Cys Ala Gln Gly Lys Lys 1 5 10 15 Cys Ile Lys His Lys Ser Asp His Asn His Lys Ser Asp His Asn His 20 25 30 Lys Ser Asp Pro Asn His Lys 35 385 33 PRT Plasmodium falciparum 385 Lys Asp Gly Asp Thr Lys Cys Thr Leu Glu Cys Ala Gln Gly Lys Lys 1 5 10 15 Cys Ile Lys His Lys Ser Asp His Asn His Lys Ser Asp His Asn His 20 25 30 Lys 386 27 PRT Plasmodium falciparum 386 Lys Asp Gly Asp Thr Lys Cys Thr Leu Glu Cys Ala Gln Gly Lys Lys 1 5 10 15 Cys Ile Lys His Lys Ser Asp His Asn His Lys 20 25 387 21 PRT Plasmodium falciparum 387 Lys Asp Gly Asp Thr Lys Cys Thr Leu Glu Cys Ala Gln Gly Lys Lys 1 5 10 15 Cys Ile Lys His Lys 20 388 16 PRT Plasmodium falciparum 388 Lys Asp Gly Asp Thr Lys Cys Thr Leu Glu Cys Ala Gln Gly Lys Lys 1 5 10 15 389 15 PRT Plasmodium falciparum 389 Lys Asp Gly Asp Thr Lys Cys Thr Leu Glu Cys Ala Gln Gly Lys 1 5 10 15 390 23 PRT Plasmodium falciparum 390 Lys Cys Ile Gln Ala Glu Cys Asn Tyr Lys Glu Cys Gly Glu Gln Lys 1 5 10 15 Cys Val Trp Asp Gly Ile His 20 391 14 PRT Plasmodium falciparum 391 Lys Glu Cys Gly Glu Gln Lys Cys Val Trp Asp Gly Ile His 1 5 10 392 32 PRT Plasmodium falciparum 392 His Ile Glu Cys Lys Cys Asn Asn Asp Tyr Val Leu Thr Asn Arg Tyr 1 5 10 15 Glu Cys Glu Pro Lys Asn Lys Cys Thr Ser Leu Glu Asp Thr Asn Lys 20 25 30 393 39 PRT Plasmodium falciparum 393 Lys Ser Asp His Asn His Lys Ser Asp His Asn His Lys Ser Asp His 1 5 10 15 Asn His Lys Ser Asp His Asn His Lys Ser Asp Pro Asn His Lys Lys 20 25 30 Lys Asn Asn Asn Asn Asn Lys 35 394 33 PRT Plasmodium falciparum 394 Lys Ser Asp His Asn His Lys Ser Asp His Asn His Lys Ser Asp His 1 5 10 15 Asn His Lys Ser Asp Pro Asn His Lys Lys Lys Asn Asn Asn Asn Asn 20 25 30 Lys 395 27 PRT Plasmodium falciparum 395 Lys Ser Asp His Asn His Lys Ser Asp His Asn His Lys Ser Asp Pro 1 5 10 15 Asn His Lys Lys Lys Asn Asn Asn Asn Asn Lys 20 25 396 21 PRT Plasmodium falciparum 396 Lys Ser Asp His Asn His Lys Ser Asp Pro Asn His Lys Lys Lys Asn 1 5 10 15 Asn Asn Asn Asn Lys 20 397 18 PRT Plasmodium falciparum 397 Lys Lys Lys Asn Asn Asn Asn Asn Lys Asp Asn Lys Ser Asp Pro Asn 1 5 10 15 His Lys 398 17 PRT Plasmodium falciparum 398 Lys Lys Asn Asn Asn Asn Asn Lys Asp Asn Lys Ser Asp Pro Asn His 1 5 10 15 Lys 399 16 PRT Plasmodium falciparum 399 Lys Asn Asn Asn Asn Asn Lys Asp Asn Lys Ser Asp Pro Asn His Lys 1 5 10 15 400 10 PRT Plasmodium falciparum 400 Lys Asp Asn Lys Ser Asp Pro Asn His Lys 1 5 10 401 7 PRT Plasmodium falciparum 401 Lys Ser Asp Pro Asn His Lys 1 5 402 35 PRT Plasmodium falciparum 402 His Ser Leu Tyr Ala Leu Gln Gln Asn Glu Glu Tyr Gln Lys Val Lys 1 5 10 15 Asn Glu Lys Asp Gln Asn Glu Ile Lys Lys Ile Lys Gln Leu Ile Glu 20 25 30 Lys Asn Lys 35 403 28 PRT Plasmodium falciparum 403 His Ser Leu Tyr Ala Leu Gln Gln Asn Glu Glu Tyr Gln Lys Val Lys 1 5 10 15 Asn Glu Lys Asp Gln Asn Glu Ile Lys Lys Ile Lys 20 25 404 26 PRT Plasmodium falciparum 404 His Ser Leu Tyr Ala Leu Gln Gln Asn Glu Glu Tyr Gln Lys Val Lys 1 5 10 15 Asn Glu Lys Asp Gln Asn Glu Ile Lys Lys 20 25 405 25 PRT Plasmodium falciparum 405 His Ser Leu Tyr Ala Leu Gln Gln Asn Glu Glu Tyr Gln Lys Val Lys 1 5 10 15 Asn Glu Lys Asp Gln Asn Glu Ile Lys 20 25 406 11 PRT Plasmodium falciparum 406 His Lys Leu Glu Asn Leu Glu Glu Met Asp Lys 1 5 10 407 11 PRT Plasmodium falciparum 407 Lys His Phe Asp Asp Asn Thr Asn Glu Gln Lys 1 5 10 408 8 PRT Plasmodium falciparum 408 Lys Lys Glu Asp Asp Glu Lys His 1 5 409 13 PRT Plasmodium falciparum 409 Lys Glu Glu Asn Asn Lys Lys Glu Asp Asp Glu Lys His 1 5 10 410 21 PRT Plasmodium falciparum 410 Lys Thr Ser Ser Gly Ile Leu Asn Lys Glu Glu Asn Asn Lys Lys Glu 1 5 10 15 Asp Asp Glu Lys His 20 411 7 PRT Plasmodium falciparum 411 Lys Asn Ile His Ile Lys Lys 1 5 412 13 PRT Plasmodium falciparum 412 His Ile Lys Lys Lys Glu Gly Ile Asp Ile Gly Tyr Lys 1 5 10 413 21 PRT Plasmodium falciparum 413 Lys Lys Met Trp Thr Cys Lys Leu Trp Asp Asn Lys Gly Asn Glu Ile 1 5 10 15 Thr Lys Asn Ile His 20 414 30 PRT Plasmodium falciparum 414 Lys Lys Gly Ile Gln Trp Asn Leu Leu Lys Lys Met Trp Thr Cys Lys 1 5 10 15 Leu Trp Asp Asn Lys Gly Asn Glu Ile Thr Lys Asn Ile His 20 25 30 415 50 PRT Plasmodium falciparum 415 Lys Glu Lys Lys Asp Ser Asn Glu Asn Arg Lys Lys Lys Gln Lys Glu 1 5 10 15 Asp Lys Lys Asn Pro Asn Lys Leu Lys Lys Ile Glu Tyr Thr Asn Lys 20 25 30 Ile Thr His Phe Phe Lys Ala Lys Asn Asn Lys Gln Gln Asn Asn Val 35 40 45 Thr His 50 416 48 PRT Plasmodium falciparum 416 Lys Lys Asp Ser Asn Glu Asn Arg Lys Lys Lys Gln Lys Glu Asp Lys 1 5 10 15 Lys Asn Pro Asn Lys Leu Lys Lys Ile Glu Tyr Thr Asn Lys Ile Thr 20 25 30 His Phe Phe Lys Ala Lys Asn Asn Lys Gln Gln Asn Asn Val Thr His 35 40 45 417 47 PRT Plasmodium falciparum 417 Lys Asp Ser Asn Glu Asn Arg Lys Lys Lys Gln Lys Glu Asp Lys Lys 1 5 10 15 Asn Pro Asn Lys Leu Lys Lys Ile Glu Tyr Thr Asn Lys Ile Thr His 20 25 30 Phe Phe Lys Ala Lys Asn Asn Lys Gln Gln Asn Asn Val Thr His 35 40 45 418 39 PRT Plasmodium falciparum 418 Lys Lys Gln Lys Glu Asp Lys Lys Asn Pro Asn Lys Leu Lys Lys Ile 1 5 10 15 Glu Tyr Thr Asn Lys Ile Thr His Phe Phe Lys Ala Lys Asn Asn Lys 20 25 30 Gln Gln Asn Asn Val Thr His 35 419 38 PRT Plasmodium falciparum 419 Lys Gln Lys Glu Asp Lys Lys Asn Pro Asn Lys Leu Lys Lys Ile Glu 1 5 10 15 Tyr Thr Asn Lys Ile Thr His Phe Phe Lys Ala Lys Asn Asn Lys Gln 20 25 30 Gln Asn Asn Val Thr His 35 420 36 PRT Plasmodium falciparum 420 Lys Glu Asp Lys Lys Asn Pro Asn Lys Leu Lys Lys Ile Glu Tyr Thr 1 5 10 15 Asn Lys Ile Thr His Phe Phe Lys Ala Lys Asn Asn Lys Gln Gln Asn 20 25 30 Asn Val Thr His 35 421 32 PRT Plasmodium falciparum 421 Lys Asn Pro Asn Lys Leu Lys Lys Ile Glu Tyr Thr Asn Lys Ile Thr 1 5 10 15 His Phe Phe Lys Ala Lys Asn Asn Lys Gln Gln Asn Asn Val Thr His 20 25 30 422 26 PRT Plasmodium falciparum 422 Lys Lys Ile Glu Tyr Thr Asn Lys Ile Thr His Phe Phe Lys Ala Lys 1 5 10 15 Asn Asn Lys Gln Gln Asn Asn Val Thr His 20 25 423 25 PRT Plasmodium falciparum 423 Lys Ile Glu Tyr Thr Asn Lys Ile Thr His Phe Phe Lys Ala Lys Asn 1 5 10 15 Asn Lys Gln Gln Asn Asn Val Thr His 20 25 424 19 PRT Plasmodium falciparum 424 Lys Ile Thr His Phe Phe Lys Ala Lys Asn Asn Lys Gln Gln Asn Asn 1 5 10 15 Val Thr His 425 48 PRT Plasmodium falciparum 425 His Lys Asn Asn Glu Asp Ile Lys Asn Asp Asn Ser Lys Asp Ile Lys 1 5 10 15 Asn Asp Asn Ser Lys Asp Ile Lys Asn Asp Asn Ser Lys Asp Ile Lys 20 25 30 Asn Asp Asn Asn Glu Asp Ile Lys Asn Asp Asn Ser Lys Asp Ile Lys 35 40 45 426 45 PRT Plasmodium falciparum 426 His Lys Asn Asn Glu Asp Ile Lys Asn Asp Asn Ser Lys Asp Ile Lys 1 5 10 15 Asn Asp Asn Ser Lys Asp Ile Lys Asn Asp Asn Ser Lys Asp Ile Lys 20 25 30 Asn Asp Asn Asn Glu Asp Ile Lys Asn Asp Asn Ser Lys 35 40 45 427 40 PRT Plasmodium falciparum 427 His Lys Asn Asn Glu Asp Ile Lys Asn Asp Asn Ser Lys Asp Ile Lys 1 5 10 15 Asn Asp Asn Ser Lys Asp Ile Lys Asn Asp Asn Ser Lys Asp Ile Lys 20 25 30 Asn Asp Asn Asn Glu Asp Ile Lys 35 40 428 32 PRT Plasmodium falciparum 428 His Lys Asn Asn Glu Asp Ile Lys Asn Asp Asn Ser Lys Asp Ile Lys 1 5 10 15 Asn Asp Asn Ser Lys Asp Ile Lys Asn Asp Asn Ser Lys Asp Ile Lys 20 25 30 429 29 PRT Plasmodium falciparum 429 His Lys Asn Asn Glu Asp Ile Lys Asn Asp Asn Ser Lys Asp Ile Lys 1 5 10 15 Asn Asp Asn Ser Lys Asp Ile Lys Asn Asp Asn Ser Lys 20 25 430 24 PRT Plasmodium falciparum 430 His Lys Asn Asn Glu Asp Ile Lys Asn Asp Asn Ser Lys Asp Ile Lys 1 5 10 15 Asn Asp Asn Ser Lys Asp Ile Lys 20 431 21 PRT Plasmodium falciparum 431 His Lys Asn Asn Glu Asp Ile Lys Asn Asp Asn Ser Lys Asp Ile Lys 1 5 10 15 Asn Asp Asn Ser Lys 20 432 16 PRT Plasmodium falciparum 432 His Lys Asn Asn Glu Asp Ile Lys Asn Asp Asn Ser Lys Asp Ile Lys 1 5 10 15 433 8 PRT Plasmodium falciparum 433 His Lys Asn Asn Glu Asp Ile Lys 1 5 434 31 PRT Plasmodium falciparum 434 Lys Lys Tyr Asp Asp Leu Gln Asn Lys Tyr Asn Ile Leu Asn Lys Leu 1 5 10 15 Lys Asn Ser Leu Glu Glu Lys Asn Glu Glu Leu Lys Lys Tyr His 20 25 30 435 30 PRT Plasmodium falciparum 435 Lys Tyr Asp Asp Leu Gln Asn Lys Tyr Asn Ile Leu Asn Lys Leu Lys 1 5 10 15 Asn Ser Leu Glu Glu Lys Asn Glu Glu Leu Lys Lys Tyr His 20 25 30 436 23 PRT Plasmodium falciparum 436 Lys Tyr Asn Ile Leu Asn Lys Leu Lys Asn Ser Leu Glu Glu Lys Asn 1 5 10 15 Glu Glu Leu Lys Lys Tyr His 20 437 17 PRT Plasmodium falciparum 437 Lys Leu Lys Asn Ser Leu Glu Glu Lys Asn Glu Glu Leu Lys Lys Tyr 1 5 10 15 His 438 15 PRT Plasmodium falciparum 438 Lys Asn Ser Leu Glu Glu Lys Asn Glu Glu Leu Lys Lys Tyr His 1 5 10 15 439 9 PRT Plasmodium falciparum 439 Lys Asn Glu Glu Leu Lys Lys Tyr His 1 5 440 35 PRT Plasmodium falciparum 440 His Met Gly Asn Asn Gln Asp Ile Asn Glu Asn Val Tyr Asn Ile Lys 1 5 10 15 Pro Gln Glu Phe Lys Glu Glu Glu Glu Glu Asp Ile Ser Met Val Asn 20 25 30 Thr Lys Lys 35 441 17 PRT Plasmodium falciparum 441 Lys Asn Ser Asn Glu Leu Lys Arg Ile Asn Asp Asn Phe Phe Lys Leu 1 5 10 15 His 442 55 PRT Plasmodium falciparum 442 Lys Pro Cys Leu Tyr Lys Lys Cys Lys Ile Ser Gln Cys Leu Tyr Lys 1 5 10 15 Lys Cys Lys Ile Ser Gln Val Trp Trp Cys Met Pro Val Lys Asp Thr 20 25 30 Phe Asn Thr Tyr Glu Arg Asn Asn Val Leu Asn Ser Lys Ile Glu Asn 35 40 45 Asn Ile Glu Lys Ile Pro His 50 55 443 40 PRT Plasmodium falciparum 443 His Ile Asn Asn Glu Tyr Thr Asn Lys Asn Pro Lys Asn Cys Leu Leu 1 5 10 15 Tyr Lys Asn Glu Glu Arg Asn Tyr Asn Asp Asn Asn Ile Lys Asp Tyr 20 25 30 Ile Asn Ser Met Asn Phe Lys Lys 35 40 444 39 PRT Plasmodium falciparum 444 His Ile Asn Asn Glu Tyr Thr Asn Lys Asn Pro Lys Asn Cys Leu Leu 1 5 10 15 Tyr Lys Asn Glu Glu Arg Asn Tyr Asn Asp Asn Asn Ile Lys Asp Tyr 20 25 30 Ile Asn Ser Met Asn Phe Lys 35 445 18 PRT Plasmodium falciparum 445 His Ile Asn Asn Glu Tyr Thr Asn Lys Asn Pro Lys Asn Cys Leu Leu 1 5 10 15 Tyr Lys 446 23 PRT Plasmodium falciparum 446 Lys Asn Lys Thr Asn Gln Ser Lys Gly Val Lys Gly Glu Tyr Glu Lys 1 5 10 15 Lys Lys Glu Thr Asn Gly His 20 447 21 PRT Plasmodium falciparum 447 Lys Thr Asn Gln Ser Lys Gly Val Lys Gly Glu Tyr Glu Lys Lys Lys 1 5 10 15 Glu Thr Asn Gly His 20 448 16 PRT Plasmodium falciparum 448 Lys Gly Val Lys Gly Glu Tyr Glu Lys Lys Lys Glu Thr Asn Gly His 1 5 10 15 449 13 PRT Plasmodium falciparum 449 Lys Gly Glu Tyr Glu Lys Lys Lys Glu Thr Asn Gly His 1 5 10 450 28 PRT Plasmodium falciparum 450 Lys Ser Gly Met Tyr Thr Asn Glu Gly Asn Lys Ser Cys Glu Cys Ser 1 5 10 15 Tyr Lys Lys Lys Ser Ser Ser Ser Asn Lys Val His 20 25 451 18 PRT Plasmodium falciparum 451 Lys Ser Cys Glu Cys Ser Tyr Lys Lys Lys Ser Ser Ser Ser Asn Lys 1 5 10 15 Val His 452 11 PRT Plasmodium falciparum 452 Lys Lys Lys Ser Ser Ser Ser Asn Lys Val His 1 5 10 453 10 PRT Plasmodium falciparum 453 Lys Lys Ser Ser Ser Ser Asn Lys Val His 1 5 10 454 9 PRT Plasmodium falciparum 454 Lys Ser Ser Ser Ser Asn Lys Val His 1 5 455 30 PRT Plasmodium falciparum 455 His Ile Met Leu Lys Ser Gly Met Tyr Thr Asn Glu Gly Asn Lys Ser 1 5 10 15 Cys Glu Cys Ser Tyr Lys Lys Lys Ser Ser Ser Ser Asn Lys 20 25 30 456 24 PRT Plasmodium falciparum 456 His Ile Met Leu Lys Ser Gly Met Tyr Thr Asn Glu Gly Asn Lys Ser 1 5 10 15 Cys Glu Cys Ser Tyr Lys Lys Lys 20 457 23 PRT Plasmodium falciparum 457 His Ile Met Leu Lys Ser Gly Met Tyr Thr Asn Glu Gly Asn Lys Ser 1 5 10 15 Cys Glu Cys Ser Tyr Lys Lys 20 458 22 PRT Plasmodium falciparum 458 His Ile Met Leu Lys Ser Gly Met Tyr Thr Asn Glu Gly Asn Lys Ser 1 5 10 15 Cys Glu Cys Ser Tyr Lys 20 459 50 PRT Plasmodium falciparum 459 Lys Pro Leu Ala Lys Leu Arg Lys Arg Glu Lys Thr Gln Ile Asn Lys 1 5 10 15 Thr Lys Tyr Glu Arg Gly Asp Val Ile Ile Asp Asn Thr Glu Ile Gln 20 25 30 Lys Ile Ile Ile Arg Asp Tyr His Glu Thr Leu Asn Val His Lys Leu 35 40 45 Asp His 50 460 43 PRT Plasmodium falciparum 460 Lys Arg Glu Lys Thr Gln Ile Asn Lys Thr Lys Tyr Glu Arg Gly Asp 1 5 10 15 Val Ile Ile Asp Asn Thr Glu Ile Gln Lys Ile Ile Ile Arg Asp Tyr 20 25 30 His Glu Thr Leu Asn Val His Lys Leu Asp His 35 40 461 40 PRT Plasmodium falciparum 461 Lys Thr Gln Ile Asn Lys Thr Lys Tyr Glu Arg Gly Asp Val Ile Ile 1 5 10 15 Asp Asn Thr Glu Ile Gln Lys Ile Ile Ile Arg Asp Tyr His Glu Thr 20 25 30 Leu Asn Val His Lys Leu Asp His 35 40 462 46 PRT Plasmodium falciparum 462 Lys Pro Leu Ala Lys Leu Arg Lys Arg Glu Lys Thr Gln Ile Asn Lys 1 5 10 15 Thr Lys Tyr Glu Arg Gly Asp Val Ile Ile Asp Asn Thr Glu Ile Gln 20 25 30 Lys Ile Ile Ile Arg Asp Tyr His Glu Thr Leu Asn Val His 35 40 45 463 40 PRT Plasmodium falciparum 463 Lys Pro Leu Ala Lys Leu Arg Lys Arg Glu Lys Thr Gln Ile Asn Lys 1 5 10 15 Thr Lys Tyr Glu Arg Gly Asp Val Ile Ile Asp Asn Thr Glu Ile Gln 20 25 30 Lys Ile Ile Ile Arg Asp Tyr His 35 40 464 36 PRT Plasmodium falciparum 464 Lys Leu Arg Lys Arg Glu Lys Thr Gln Ile Asn Lys Thr Lys Tyr Glu 1 5 10 15 Arg Gly Asp Val Ile Ile Asp Asn Thr Glu Ile Gln Lys Ile Ile Ile 20 25 30 Arg Asp Tyr His 35 465 33 PRT Plasmodium falciparum 465 Lys Arg Glu Lys Thr Gln Ile Asn Lys Thr Lys Tyr Glu Arg Gly Asp 1 5 10 15 Val Ile Ile Asp Asn Thr Glu Ile Gln Lys Ile Ile Ile Arg Asp Tyr 20 25 30 His 466 30 PRT Plasmodium falciparum 466 Lys Thr Gln Ile Asn Lys Thr Lys Tyr Glu Arg Gly Asp Val Ile Ile 1 5 10 15 Asp Asn Thr Glu Ile Gln Lys Ile Ile Ile Arg Asp Tyr His 20 25 30 467 41 PRT Plasmodium falciparum 467 Lys Lys Asp Lys Glu Lys Lys Lys Asp Ser Asn Glu Asn Arg Lys Lys 1 5 10 15 Lys Gln Lys Glu Asp Lys Lys Asn Pro Asn Asp Asn Lys Leu Lys Lys 20 25 30 Ile Glu Tyr Thr Asn Lys Ile Thr His 35 40 468 40 PRT Plasmodium falciparum 468 Lys Asp Lys Glu Lys Lys Lys Asp Ser Asn Glu Asn Arg Lys Lys Lys 1 5 10 15 Gln Lys Glu Asp Lys Lys Asn Pro Asn Asp Asn Lys Leu Lys Lys Ile 20 25 30 Glu Tyr Thr Asn Lys Ile Thr His 35 40 469 38 PRT Plasmodium falciparum 469 Lys Glu Lys Lys Lys Asp Ser Asn Glu Asn Arg Lys Lys Lys Gln Lys 1 5 10 15 Glu Asp Lys Lys Asn Pro Asn Asp Asn Lys Leu Lys Lys Ile Glu Tyr 20 25 30 Thr Asn Lys Ile Thr His 35 470 36 PRT Plasmodium falciparum 470 Lys Lys Lys Asp Ser Asn Glu Asn Arg Lys Lys Lys Gln Lys Glu Asp 1 5 10 15 Lys Lys Asn Pro Asn Asp Asn Lys Leu Lys Lys Ile Glu Tyr Thr Asn 20 25 30 Lys Ile Thr His 35 471 35 PRT Plasmodium falciparum 471 Lys Lys Asp Ser Asn Glu Asn Arg Lys Lys Lys Gln Lys Glu Asp Lys 1 5 10 15 Lys Asn Pro Asn Asp Asn Lys Leu Lys Lys Ile Glu Tyr Thr Asn Lys 20 25 30 Ile Thr His 35 472 34 PRT Plasmodium falciparum 472 Lys Asp Ser Asn Glu Asn Arg Lys Lys Lys Gln Lys Glu Asp Lys Lys 1 5 10 15 Asn Pro Asn Asp Asn Lys Leu Lys Lys Ile Glu Tyr Thr Asn Lys Ile 20 25 30 Thr His 473 27 PRT Plasmodium falciparum 473 Lys Lys Lys Gln Lys Glu Asp Lys Lys Asn Pro Asn Asp Asn Lys Leu 1 5 10 15 Lys Lys Ile Glu Tyr Thr Asn Lys Ile Thr His 20 25 474 26 PRT Plasmodium falciparum 474 Lys Lys Gln Lys Glu Asp Lys Lys Asn Pro Asn Asp Asn Lys Leu Lys 1 5 10 15 Lys Ile Glu Tyr Thr Asn Lys Ile Thr His 20 25 475 25 PRT Plasmodium falciparum 475 Lys Gln Lys Glu Asp Lys Lys Asn Pro Asn Asp Asn Lys Leu Lys Lys 1 5 10 15 Ile Glu Tyr Thr Asn Lys Ile Thr His 20 25 476 23 PRT Plasmodium falciparum 476 Lys Glu Asp Lys Lys Asn Pro Asn Asp Asn Lys Leu Lys Lys Ile Glu 1 5 10 15 Tyr Thr Asn Lys Ile Thr His 20 477 20 PRT Plasmodium falciparum 477 Lys Lys Asn Pro Asn Asp Asn Lys Leu Lys Lys Ile Glu Tyr Thr Asn 1 5 10 15 Lys Ile Thr His 20 478 19 PRT Plasmodium falciparum 478 Lys Asn Pro Asn Asp Asn Lys Leu Lys Lys Ile Glu Tyr Thr Asn Lys 1 5 10 15 Ile Thr His 479 13 PRT Plasmodium falciparum 479 Lys Leu Lys Lys Ile Glu Tyr Thr Asn Lys Ile Thr His 1 5 10 480 11 PRT Plasmodium falciparum 480 Lys Lys Ile Glu Tyr Thr Asn Lys Ile Thr His 1 5 10 481 10 PRT Plasmodium falciparum 481 Lys Ile Glu Tyr Thr Asn Lys Ile Thr His 1 5 10 482 44 PRT Plasmodium falciparum 482 His Gly Gln Ile Lys Ile Glu Asp Val Asn Asn Glu Asn Phe Asn Asn 1 5 10 15 Glu Gln Met Lys Asn Lys Tyr Asn Asp Glu Glu Lys Met Asp Ile Ser 20 25 30 Lys Ser Lys Ser Leu Lys Ser Asp Phe Leu Glu Lys 35 40 483 38 PRT Plasmodium falciparum 483 His Gly Gln Ile Lys Ile Glu Asp Val Asn Asn Glu Asn Phe Asn Asn 1 5 10 15 Glu Gln Met Lys Asn Lys Tyr Asn Asp Glu Glu Lys Met Asp Ile Ser 20 25 30 Lys Ser Lys Ser Leu Lys 35 484 35 PRT Plasmodium falciparum 484 His Gly Gln Ile Lys Ile Glu Asp Val Asn Asn Glu Asn Phe Asn Asn 1 5 10 15 Glu Gln Met Lys Asn Lys Tyr Asn Asp Glu Glu Lys Met Asp Ile Ser 20 25 30 Lys Ser Lys 35 485 33 PRT Plasmodium falciparum 485 His Gly Gln Ile Lys Ile Glu Asp Val Asn Asn Glu Asn Phe Asn Asn 1 5 10 15 Glu Gln Met Lys Asn Lys Tyr Asn Asp Glu Glu Lys Met Asp Ile Ser 20 25 30 Lys 486 31 PRT Plasmodium falciparum 486 Lys Lys Tyr Asp Asp Leu Gln Asn Lys Tyr Asn Ile Leu Asn Lys Leu 1 5 10 15 Lys Asn Ser Leu Glu Glu Lys Asn Glu Glu Leu Lys Lys Tyr His 20 25 30 487 30 PRT Plasmodium falciparum 487 Lys Tyr Asp Asp Leu Gln Asn Lys Tyr Asn Ile Leu Asn Lys Leu Lys 1 5 10 15 Asn Ser Leu Glu Glu Lys Asn Glu Glu Leu Lys Lys Tyr His 20 25 30 488 23 PRT Plasmodium falciparum 488 Lys Tyr Asn Ile Leu Asn Lys Leu Lys Asn Ser Leu Glu Glu Lys Asn 1 5 10 15 Glu Glu Leu Lys Lys Tyr His 20 489 17 PRT Plasmodium falciparum 489 Lys Leu Lys Asn Ser Leu Glu Glu Lys Asn Glu Glu Leu Lys Lys Tyr 1 5 10 15 His 490 15 PRT Plasmodium falciparum 490 Lys Asn Ser Leu Glu Glu Lys Asn Glu Glu Leu Lys Lys Tyr His 1 5 10 15 491 9 PRT Plasmodium falciparum 491 Lys Asn Glu Glu Leu Lys Lys Tyr His 1 5 492 44 PRT Plasmodium falciparum 492 His Met Gly Asn Asn Gln Asp Ile Asn Glu Asn Val Tyr Asn Ile Lys 1 5 10 15 Pro Gln Glu Phe Lys Glu Glu Glu Glu Glu Asp Ile Ser Met Val Asn 20 25 30 Thr Lys Lys Cys Asp Asp Ile Gln Glu Asn Ile Lys 35 40 493 50 PRT Plasmodium falciparum 493 Lys Thr Asn Leu Tyr Asn Ile Tyr Asn Asn Lys Asn Asp Asp Lys Asp 1 5 10 15 Asn Ile Leu Asp Asn Glu Asn Arg Glu Gly Leu Tyr Leu Cys Asp Val 20 25 30 Met Lys Asn Ser Asn Glu Leu Lys Arg Ile Asn Asp Asn Phe Phe Lys 35 40 45 Leu His 50 494 17 PRT Plasmodium falciparum 494 Lys Asn Ser Asn Glu Leu Lys Arg Ile Asn Asp Asn Phe Phe Lys Leu 1 5 10 15 His 495 11 PRT Plasmodium falciparum 495 Lys Arg Ile Asn Asp Asn Phe Phe Lys Leu His 1 5 10 496 40 PRT Plasmodium falciparum 496 His Ile Asn Asn Glu Tyr Thr Asn Lys Asn Pro Lys Asn Cys Leu Leu 1 5 10 15 Tyr Lys Asn Glu Glu Arg Asn Tyr Asn Asp Asn Asn Ile Lys Asp Tyr 20 25 30 Ile Asn Ser Met Asn Phe Lys Lys 35 40 497 39 PRT Plasmodium falciparum 497 His Ile Asn Asn Glu Tyr Thr Asn Lys Asn Pro Lys Asn Cys Leu Leu 1 5 10 15 Tyr Lys Asn Glu Glu Arg Asn Tyr Asn Asp Asn Asn Ile Lys Asp Tyr 20 25 30 Ile Asn Ser Met Asn Phe Lys 35 498 18 PRT Plasmodium falciparum 498 His Ile Asn Asn Glu Tyr Thr Asn Lys Asn Pro Lys Asn Cys Leu Leu 1 5 10 15 Tyr Lys 499 45 PRT Plasmodium falciparum 499 Lys Pro Cys Leu Tyr Lys Lys Cys Lys Ile Ser Gln Val Trp Trp Cys 1 5 10 15 Met Pro Val Lys Asp Thr Phe Asn Thr Tyr Glu Arg Asn Asn Val Leu 20 25 30 Asn Ser Lys Ile Glu Asn Asn Ile Glu Lys Ile Pro His 35 40 45 500 39 PRT Plasmodium falciparum 500 Lys Cys Lys Ile Ser Gln Val Trp Trp Cys Met Pro Val Lys Asp Thr 1 5 10 15 Phe Asn Thr Tyr Glu Arg Asn Asn Val Leu Asn Ser Lys Ile Glu Asn 20 25 30 Asn Ile Glu Lys Ile Pro His 35 501 11 PRT Plasmodium falciparum 501 Lys Ile Glu Asn Asn Ile Glu Lys Ile Pro His 1 5 10 502 23 PRT Plasmodium falciparum 502 Lys Asn Lys Thr Asn Gly Ser Lys Gly Val Lys Gly Glu Tyr Glu Lys 1 5 10 15 Lys Lys Glu Thr Asn Gly His 20 503 21 PRT Plasmodium falciparum 503 Lys Thr Asn Gly Ser Lys Gly Val Lys Gly Glu Tyr Glu Lys Lys Lys 1 5 10 15 Glu Thr Asn Gly His 20 504 16 PRT Plasmodium falciparum 504 Lys Gly Val Lys Gly Glu Tyr Glu Lys Lys Lys Glu Thr Asn Gly His 1 5 10 15 505 13 PRT Plasmodium falciparum 505 Lys Gly Glu Tyr Glu Lys Lys Lys Glu Thr Asn Gly His 1 5 10 506 60 PRT Plasmodium falciparum 506 Lys Thr Ile Glu Lys Ile Asn Lys Ser Lys Ser Trp Phe Phe Glu Glu 1 5 10 15 Leu Asp Glu Ile Asp Lys Pro Leu Ala Lys Leu Arg Lys Arg Glu Lys 20 25 30 Thr Gln Ile Asn Lys Thr Lys Tyr Glu Arg Gly Asp Val Ile Ile Asp 35 40 45 Asn Thr Glu Ile Gln Lys Ile Ile Arg Asp Tyr His 50 55 60 507 56 PRT Plasmodium falciparum 507 Lys Ile Asn Lys Ser Lys Ser Trp Phe Phe Glu Glu Leu Asp Glu Ile 1 5 10 15 Asp Lys Pro Leu Ala Lys Leu Arg Lys Arg Glu Lys Thr Gln Ile Asn 20 25 30 Lys Thr Lys Tyr Glu Arg Gly Asp Val Ile Ile Asp Asn Thr Glu Ile 35 40 45 Gln Lys Ile Ile Arg Asp Tyr His 50 55 508 39 PRT Plasmodium falciparum 508 Lys Pro Leu Ala Lys Leu Arg Lys Arg Glu Lys Thr Gln Ile Asn Lys 1 5 10 15 Thr Lys Tyr Glu Arg Gly Asp Val Ile Ile Asp Asn Thr Glu Ile Gln 20 25 30 Lys Ile Ile Arg Asp Tyr His 35 509 32 PRT Plasmodium falciparum 509 His Ile Met Leu Lys Ser Gln Met Tyr Thr Asn Glu Gly Asn Lys Ser 1 5 10 15 Cys Glu Cys Ser Tyr Lys Lys Lys Ser Ser Ser Ser Asn Lys Val His 20 25 30 510 35 PRT Plasmodium falciparum 510 Lys Leu Arg Lys Arg Glu Lys Thr Gln Ile Asn Lys Thr Lys Tyr Glu 1 5 10 15 Arg Gly Asp Val Ile Ile Asp Asn Thr Glu Ile Gln Lys Ile Ile Arg 20 25 30 Asp Tyr His 35 511 32 PRT Plasmodium falciparum 511 Lys Arg Glu Lys Thr Gln Ile Asn Lys Thr Lys Tyr Glu Arg Gly Asp 1 5 10 15 Val Ile Ile Asp Asn Thr Glu Ile Gln Lys Ile Ile Arg Asp Tyr His 20 25 30 512 29 PRT Plasmodium falciparum 512 Lys Thr Gln Ile Asn Lys Thr Lys Tyr Glu Arg Gly Asp Val Ile Ile 1 5 10 15 Asp Asn Thr Glu Ile Gln Lys Ile Ile Arg Asp Tyr His 20 25 513 48 PRT Plasmodium falciparum 513 Lys Pro Leu Ala Lys Leu Arg Lys Arg Glu Lys Thr Gln Ile Asn Lys 1 5 10 15 Thr Lys Tyr Glu Arg Gly Asp Val Ile Ile Asp Asn Thr Glu Ile Gln 20 25 30 Lys Ile Ile Arg Asp Tyr His Thr Leu Asn Val His Lys Leu Asp His 35 40 45 514 44 PRT Plasmodium falciparum 514 Lys Leu Arg Lys Arg Glu Lys Thr Gln Ile Asn Lys Thr Lys Tyr Glu 1 5 10 15 Arg Gly Asp Val Ile Ile Asp Asn Thr Glu Ile Gln Lys Ile Ile Arg 20 25 30 Asp Tyr His Thr Leu Asn Val His Lys Leu Asp His 35 40 515 41 PRT Plasmodium falciparum 515 Lys Arg Glu Lys Thr Gln Ile Asn Lys Thr Lys Tyr Glu Arg Gly Asp 1 5 10 15 Val Ile Ile Asp Asn Thr Glu Ile Gln Lys Ile Ile Arg Asp Tyr His 20 25 30 Thr Leu Asn Val His Lys Leu Asp His 35 40 516 38 PRT Plasmodium falciparum 516 Lys Thr Gln Ile Asn Lys Thr Lys Tyr Glu Arg Gly Asp Val Ile Ile 1 5 10 15 Asp Asn Thr Glu Ile Gln Lys Ile Ile Arg Asp Tyr His Thr Leu Asn 20 25 30 Val His Lys Leu Asp His 35 517 44 PRT Plasmodium falciparum 517 Lys Pro Leu Ala Lys Leu Arg Lys Arg Glu Lys Thr Gln Ile Asn Lys 1 5 10 15 Thr Lys Tyr Glu Arg Gly Asp Val Ile Ile Asp Asn Thr Glu Ile Gln 20 25 30 Lys Ile Ile Arg Asp Tyr His Thr Leu Asn Val His 35 40 518 40 PRT Plasmodium falciparum 518 Lys Leu Arg Lys Arg Glu Lys Thr Gln Ile Asn Lys Thr Lys Tyr Glu 1 5 10 15 Arg Gly Asp Val Ile Ile Asp Asn Thr Glu Ile Gln Lys Ile Ile Arg 20 25 30 Asp Tyr His Thr Leu Asn Val His 35 40 519 37 PRT Plasmodium falciparum 519 Lys Arg Glu Lys Thr Gln Ile Asn Lys Thr Lys Tyr Glu Arg Gly Asp 1 5 10 15 Val Ile Ile Asp Asn Thr Glu Ile Gln Lys Ile Ile Arg Asp Tyr His 20 25 30 Thr Leu Asn Val His 35 520 34 PRT Plasmodium falciparum 520 Lys Thr Gln Ile Asn Lys Thr Lys Tyr Glu Arg Gly Asp Val Ile Ile 1 5 10 15 Asp Asn Thr Glu Ile Gln Lys Ile Ile Arg Asp Tyr His Thr Leu Asn 20 25 30 Val His 521 32 PRT Plasmodium falciparum 521 His Ile Met Leu Lys Ser Gln Met Tyr Thr Asn Glu Gly Asn Lys Ser 1 5 10 15 Cys Glu Cys Ser Tyr Lys Lys Lys Ser Ser Ser Ser Asn Lys Val His 20 25 30 522 28 PRT Plasmodium falciparum 522 Lys Ser Gln Met Tyr Thr Asn Glu Gly Asn Lys Ser Cys Glu Cys Ser 1 5 10 15 Tyr Lys Lys Lys Ser Ser Ser Ser Asn Lys Val His 20 25 523 18 PRT Plasmodium falciparum 523 Lys Ser Cys Glu Cys Ser Tyr Lys Lys Lys Ser Ser Ser Ser Asn Lys 1 5 10 15 Val His 524 11 PRT Plasmodium falciparum 524 Lys Lys Lys Ser Ser Ser Ser Asn Lys Val His 1 5 10 525 10 PRT Plasmodium falciparum 525 Lys Lys Ser Ser Ser Ser Asn Lys Val His 1 5 10 526 9 PRT Plasmodium falciparum 526 Lys Ser Ser Ser Ser Asn Lys Val His 1 5 527 30 PRT Plasmodium falciparum 527 His Ile Met Leu Lys Ser Gln Met Tyr Thr Asn Glu Gly Asn Lys Ser 1 5 10 15 Cys Glu Cys Ser Tyr Lys Lys Lys Ser Ser Ser Ser Asn Lys 20 25 30 528 24 PRT Plasmodium falciparum 528 His Ile Met Leu Lys Ser Gln Met Tyr Thr Asn Glu Gly Asn Lys Ser 1 5 10 15 Cys Glu Cys Ser Tyr Lys Lys Lys 20 529 23 PRT Plasmodium falciparum 529 His Ile Met Leu Lys Ser Gln Met Tyr Thr Asn Glu Gly Asn Lys Ser 1 5 10 15 Cys Glu Cys Ser Tyr Lys Lys 20 530 22 PRT Plasmodium falciparum 530 His Ile Met Leu Lys Ser Gln Met Tyr Thr Asn Glu Gly Asn Lys Ser 1 5 10 15 Cys Glu Cys Ser Tyr Lys 20 531 36 PRT Plasmodium falciparum 531 His Asn Asn His Asn Ile Gln Ile Tyr Lys Asp Lys Arg Ile Asn Phe 1 5 10 15 Met Asn Pro His Lys Val Met Tyr His Asp Asn Met Ser Lys Asn Glu 20 25 30 Arg Thr Glu Lys 35 532 30 PRT Plasmodium falciparum 532 His Asn Asn His Asn Ile Gln Ile Tyr Lys Asp Lys Arg Ile Asn Phe 1 5 10 15 Met Asn Pro His Lys Val Met Tyr His Asp Asn Met Ser Lys 20 25 30 533 21 PRT Plasmodium falciparum 533 His Asn Asn His Asn Ile Gln Ile Tyr Lys Asp Lys Arg Ile Asn Phe 1 5 10 15 Met Asn Pro His Lys 20 534 17 PRT Plasmodium falciparum 534 His Lys Val Met Tyr His Asp Asn Met Ser Lys Asn Glu Arg Thr Glu 1 5 10 15 Lys 535 11 PRT Plasmodium falciparum 535 His Lys Val Met Tyr His Asp Asn Met Ser Lys 1 5 10 

What is claimed is:
 1. An isolated influenza virus peptide having from 7 to about 50 amino acids comprising (1) at least one lysine residue located six to ten residues from a second lysine residue; (2) at least one histidine residue; and (3) at least 6% lysine residues.
 2. The peptide of claim 1 wherein the peptide is present in an emerging strain of influenza virus.
 3. An antibody that specifically binds to an influenza virus peptide sequence having from 7 to about 50 amino acids comprising (1) at least one lysine residue located six to ten amino acid residues from a second lysine residue; (2) at least one histidine residue; and (3) at least 6% lysine residues.
 4. The antibody of claim 3, wherein said antibody specifically binds to an influenza virus peptide present in an emerging strain of influenza virus.
 5. An antibody cocktail comprising a plurality of antibodies, wherein each of said antibodies specifically binds to an influenza virus peptide sequence having from 7 to about 50 amino acids comprising (1) at least one lysine residue located six to ten amino acid residues from a second lysine residue; (2) at least one histidine residue; and (3) at least 6% lysine residues.
 6. The antibody cocktail of claim 5 wherein the plurality of antibodies each independently and specifically binds to a Replikin peptide sequence present in an emerging strain of influenza virus.
 7. A composition comprising the antibody of claim 3 or claim 4 and a pharmaceutically acceptable carrier and/or adjuvant.
 8. A composition comprising the antibody cocktail of claim 5 or 6 and a pharmaceutically acceptable carrier and/or adjuvant.
 9. A therapeutic composition comprising the isolated influenza virus peptide of claim 1 and a pharmaceutically acceptable carrier and/or adjuvant.
 10. The therapeutic composition of claim 9 wherein the peptide is conserved in a strain of influenza virus for at least two consecutive years including the current year.
 11. A therapeutic composition comprising a plurality of isolated influenza virus peptides each having from 7 to about 50 amino acids comprising (1) at least one lysine residue located six to ten residues from a second lysine residue; (2) at least one histidine residue; and (3) at least 6% lysine residues, and a pharmaceutically acceptable carrier.
 12. The therapeutic composition of claim 11 wherein at least one of the plurality of influenza virus peptides is conserved in the influenza virus hemagglutinin amino acid sequence for at least two consecutive years including the current year.
 13. An antisense nucleic acid molecule complementary to an influenza virus hemagglutinin Replikin mRNA sequence, said Replikin mRNA sequence having from 7 to about 50 amino acids comprising (1) at least one lysine residue located six to ten residues from a second lysine residue; (2) at least one histidine residue; and (3) at least 6% lysine residues.
 14. An antisense nucleic acid molecule complementary to the coding strand of the gene or the mRNA encoding influenza virus hemagglutinin, wherein said antisense nucleic acid molecule is complementary to a nucleotide sequence present in an emerging strain of influenza virus.
 15. A method of stimulating the immune system of a subject to produce antibodies to influenza virus comprising administering an effective amount of at least one isolated influenza virus Replikin peptide having from 7 to about 50 amino acids comprising (1) at least one lysine residue located six to ten amino acid residues from a second lysine residue; (2) at least one histidine residue; and (3) at least 6% lysine residues.
 16. The method of claim 15 wherein the at least one Replikin peptide is present in influenza virus hemagglutinin protein.
 17. The method of claim 15 wherein at least one of the at least one Replikin peptide is conserved in an emerging strain of influenza virus for at least two consecutive years, including the current year.
 18. A method of selecting an influenza virus peptide for inclusion in an influenza virus vaccine comprising (1) obtaining at least one isolate of each strain of a plurality of strains of influenza virus, (2) analyzing the hemagglutinin amino acid sequence of the at least one isolate of each strain of the plurality of strains of influenza virus for the presence and concentration of Replikin sequences, (3) comparing the concentration of Replikin sequences in the hemagglutinin amino acid sequence of the at least one isolate of each strain of the plurality of strains of influenza virus to the concentration of Replikin sequences observed in the hemagglutinin amino acid sequence of each of the strains at at least one earlier time period to provide the concentration of Replikins for at least two time periods, said at least one earlier time period being within about six months to about three years prior to step (1), (4) identifying the strain of influenza virus having the highest increase in concentration of Replikin sequences during the at least two time periods, (5) selecting at least one Replikin sequence present in the strain of influenza virus peptide identified in step (4) as an isolated peptide for inclusion in an influenza virus vaccine.
 19. The method of claim 18 wherein the Replikin sequence is conserved for at least about two consecutive years within the strain of influenza virus having the highest increase in Replikin sequence concentration during the at least two time periods.
 20. The method of claim 18 wherein in step (5) a plurality of Replikin sequences is selected.
 21. A method of making an influenza virus vaccine comprising (1) identifying a strain of influenza virus as an emerging strain, (2) selecting at least one Replikin sequence present in the emerging strain as a peptide template for influenza virus vaccine manufacture, (3) synthesizing peptides having the amino acid sequence of the at least one Replikin sequence selected in step (2), and (4) combining a therapeutically effective amount of the peptides of step (4) with a pharmaceutically acceptable carrier and/or adjuvant.
 22. The method of claim 21 wherein the at least one Replikin selected in step (2) is conserved in the influenza virus hemagglutinin sequence for at least two consecutive years, including the current year.
 23. A method of identifying an emerging strain of influenza virus comprising (1) obtaining at least one isolate of each strain of a plurality of strains of influenza virus, (2) analyzing the hemagglutinin amino acid sequence of the at least one isolate of each strain of the plurality of strains of influenza virus for the presence and concentration of Replikin sequences, (3) comparing the concentration of Replikin sequences in the hemagglutinin amino acid sequence of the at least one isolate of each strain of the plurality of strains of influenza virus to the concentration of Replikin sequences observed in the hemagglutinin amino acid sequence of each of the strains at at least one earlier time period to provide the concentration of Replikins for at least two time periods, said at least one earlier time period being within about six months to about three years prior to step (1), and (4) identifying the strain of influenza virus having the highest increase in concentration of Replikin sequences during the at least two time periods.
 24. An influenza virus vaccine comprising at least one isolated Replikin present in the hemagglutinin protein of an emerging strain of influenza virus and a pharmaceutically acceptable carrier and/or adjuvant.
 25. The influenza virus vaccine of claim 24 wherein the vaccine comprises a plurality of isolated Replikins.
 26. The vaccine of claim 24 wherein the at least one isolated Replikin is conserved for at least two consecutive years in the emerging strain.
 27. A method of preventing or treating influenza virus infection comprising administering to a patient in need thereof a vaccine comprising at least one isolated Replikin present in the hemagglutinin protein of an emerging strain of influenza virus and a pharmaceutically acceptable carrier and/or adjuvant.
 28. The method of claim 27 wherein the vaccine is administered prior to the onset of flu season.
 29. The method of claim 27 further comprising administering an antiviral agent.
 30. the method of claim 27 wherein the antiviral agent is gancyclovir.
 31. The method of claim 27 wherein the vaccine comprises a Replikin that has been conserved in the emerging strain for at least about one year.
 32. A malaria vaccine comprising at least one isolated Plasmodium falciparum replikin and a pharmaceutically acceptable carrier.
 33. The vaccine of claim 32 comprising a plurality of Plasmodium falciparum replikins.
 34. The vaccine of claim 33 comprising overlapping Replikins.
 35. The vaccine of claim 33 wherein the Replikin is present on the merozoite surface or within the parasitophorous vacuole of the Plasmodium falciparum.
 36. An isolated Plasmodium falciparum peptide comprising (1) at least one lysine residue located six to ten residues from a second lysine residue; (2) at least one histidine residue; and (3) at least 6% lysine residues.
 37. The peptide of claim 36 comprising overlapping replikins.
 38. An antibody that specifically binds to a Plasmodium falciparum peptide sequence having (1) at least one lysine residue located six to ten residues from a second lysine residue; (2) at least one histidine residue; and (3) at least 6% lysine residues.
 39. An antibody cocktail comprising a plurality of antibodies, wherein each of the plurality of antibodies specifically binds to a Plasmodium falciparum peptide sequence having (1) at least one lysine residue located six to ten residues from a second lysine residue; (2) at least one histidine residue; and (3) at least 6% lysine residues.
 40. A composition comprising the antibody of claim 38 or antibody cocktail of claim 39 and a pharmaceutical composition.
 41. A method of stimulating the immune system of a subject to produce antibodies to Plasmodium falciparum comprising administering to the subject an effective amount of at least one Plasmodium falciparum Replikin and a pharmaceutically acceptable carrier.
 42. The method of claim 41 wherein the replikin is located on the merozoite surface or within the parasitophorous vacuole of the Plasmodium falciparum.
 43. A method of preventing or treating malaria comprising administering to a patient a therapeutically effective amount of a vaccine comprising at least one Plasmodium falciparum Replikin and a pharmaceutically acceptable carrier.
 44. A method of detecting the presence of a contaminating organism in a body sample or environmental sample comprising 1) isolating nucleic acids from the body sample or environmental sample; 2) screening the nucleic acids for the presence of a replikin structure; and 3) correlating the presence of a Replikin structure with the presence of the contaminating organism.
 45. The method of claim 44 wherein the body sample is blood.
 46. A method for increasing the replication rate of an organism comprising transforming a gene encoding an enzyme having a replication function in the organism with at least one Replikin structure.
 47. The method of claim 46 wherein the organism is a food plant.
 48. The method of claim 46 wherein the organism is a rice plant. 